View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_high_13 (Length: 242)
Name: NF8663_high_13
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9095090 - 9095314
Alignment:
| Q |
1 |
ctaagctttgtccttgttcttttcctgccacattgatatctgagcattttgagttttgtctataacataaccaaaatactcaatttttatttttaagttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
9095090 |
ctaagctttgtccttgttcttttcctgccacattgatatctgagcattttgagttttgtctgtaacataaccaaagtactcaatttttatttttaagttc |
9095189 |
T |
|
| Q |
101 |
cctatcataaccataagtttctataattgttcacccattaaacaattnnnnnnnngaccaaaatatctcagc-cacaattgtatgacctattgtatgtct |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
9095190 |
cctatcataaccataagtttctataagtgttcacccattaaacaatt-aaaaaaagaccaaaatatctcagcgcacaattgtatgacctattgtatatct |
9095288 |
T |
|
| Q |
200 |
tgttccacttttaaagaggcgagaat |
225 |
Q |
| |
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|||| |||| ||| ||||||||||| |
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|
| T |
9095289 |
tgtttcactcttaccgaggcgagaat |
9095314 |
T |
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