View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_high_15 (Length: 239)
Name: NF8663_high_15
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 33866236 - 33866057
Alignment:
| Q |
24 |
aaatatcatgtaagaacccgaaa-aaattgaaaatggtggtcatctcttagtcttaccttaaaaaca--gcgtgtgtcgagaagaacaacgttgttgtcg |
120 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |
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| T |
33866236 |
aaatatcaagtaagaacccgaaagaaattgaaaatggtggtcatctcttagtcttaccttaaaaaaatagcatgtgtcgagaagaacaactctgttgccg |
33866137 |
T |
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| Q |
121 |
gaaaaacatggtgaattgagcaggtaacaacaaaagctaacgaaattaatcaatggaatatgaactgagcaagaaccgca |
200 |
Q |
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| T |
33866136 |
gaaacacatggtgaattgagcatgtaacgacaaaagctgacgaaattaatcaatgggataggaattgagcaagaatcgca |
33866057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 11075508 - 11075329
Alignment:
| Q |
24 |
aaatatcatgtaagaacccgaaa-aaattgaaaatggtggtcatctcttagtcttaccttaaaaaca--gcgtgtgtcgagaagaacaacgttgttgtcg |
120 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| || |
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| T |
11075508 |
aaatatcaagtaagaacccgaaagaaattgaaaatggtggtcatctcttagtcttaccttaaaaatatagcgtgagtcgagaagaacaattctgttgccg |
11075409 |
T |
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| Q |
121 |
gaaaaacatggtgaattgagcaggtaacaacaaaagctaacgaaattaatcaatggaatatgaactgagcaagaaccgca |
200 |
Q |
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|||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||| || ||||||||||||||| |
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| T |
11075408 |
gaaacacatggtgaattgagcatgtaacgacaaaagctgacgaaattaatcaatgggatagaaattgagcaagaaccgca |
11075329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 23216456 - 23216635
Alignment:
| Q |
24 |
aaatatcatgtaagaacccgaaa-aaattgaaaatggtggtcatctcttagtcttaccttaaaaaca--gcgtgtgtcgagaagaacaacgttgttgtcg |
120 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||| || |
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| T |
23216456 |
aaatatcaagtaagaacccgaaagaaattgaaaatggtggtcatctcttaatcttaccttaaaaaaatagcgtgtgtcgagaagaacaactctgttgccg |
23216555 |
T |
|
| Q |
121 |
gaaaaacatggtgaattgagcaggtaacaacaaaagctaacgaaattaatcaatggaatatgaactgagcaagaaccgca |
200 |
Q |
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|||| |||||||||||||| || ||||| ||| ||||| ||||||||||||||||| ||| ||| ||||||||||||||| |
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| T |
23216556 |
gaaacacatggtgaattgaacatgtaacgacataagctgacgaaattaatcaatgggataggaattgagcaagaaccgca |
23216635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 23216667 - 23216704
Alignment:
| Q |
202 |
aaaaatgtaatcttctccatcttcgtcttctccggatt |
239 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |
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| T |
23216667 |
aaaaacgtaatcttctccatctttgtcttctccggatt |
23216704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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