View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_high_3 (Length: 319)
Name: NF8663_high_3
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 2871431 - 2871136
Alignment:
| Q |
18 |
tcagctagttcatttttcatttttgaaacatactcaactttctttctttccaaattttcctattaattaaaacaattttgtaagttacaaatgagggaaa |
117 |
Q |
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| T |
2871431 |
tcagctagttcatttttcatttttgaaacatactcaactttctttctttccaaattttcctattaattaaaacaattttgtaagttacaaatgagggaaa |
2871332 |
T |
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| Q |
118 |
cgactgatatttgaaaataaaagcaagtcacattgatgaattaaatgagtattacaggatccaagagcgctcagatgaaatgactcgcatctcttctagt |
217 |
Q |
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| T |
2871331 |
caactgatatttgaaaataaaagcaagtcacattgatgaattaaatgagtattacgggacccaagagcgcttagatgaaatgactcgcatctcttctaat |
2871232 |
T |
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| Q |
218 |
ctaaccaaggtttagggtttgatcccgagccgaacttgagcatttaacaacggtaaaacttttgggaggaatttgtcacacatttgagttccacaa |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2871231 |
ctaaccaaggtttagggtttgatcccgagccgagcttgagcatttaacaacggtaaaacttttgggaggaatttgtcacacatttgagttccacaa |
2871136 |
T |
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