View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8663_high_4 (Length: 318)
Name: NF8663_high_4
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 38120720 - 38121022
Alignment:
| Q |
1 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcat---catcatcgaagcatcgcactcacaggc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38120720 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggc |
38120819 |
T |
|
| Q |
98 |
catggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38120820 |
catggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcagg |
38120919 |
T |
|
| Q |
198 |
agcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120920 |
agcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaag |
38121019 |
T |
|
| Q |
298 |
ata |
300 |
Q |
| |
|
||| |
|
|
| T |
38121020 |
ata |
38121022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 38609400 - 38609105
Alignment:
| Q |
1 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609400 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat |
38609301 |
T |
|
| Q |
101 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38609300 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagc |
38609201 |
T |
|
| Q |
201 |
agagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaa |
296 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38609200 |
agagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaa |
38609105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 38794183 - 38793888
Alignment:
| Q |
1 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794183 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat |
38794084 |
T |
|
| Q |
101 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38794083 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagc |
38793984 |
T |
|
| Q |
201 |
agagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaa |
296 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38793983 |
agagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaa |
38793888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
| Q |
45 |
agaaagaactgaaccacaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
141 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
142 |
ggagacacacctgc |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34592857 |
ggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 38287498 - 38287457
Alignment:
| Q |
11 |
taactacaaatttcatagagattcacttcagcagagaaagaa |
52 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaa |
38287457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 28730297 - 28730596
Alignment:
| Q |
1 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||||||||||||||| | || | |||||||| |||| ||| || |||| |||||||||||||| |
|
|
| T |
28730297 |
gtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccat |
28730396 |
T |
|
| Q |
101 |
ggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaagagc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
28730397 |
ggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagc |
28730496 |
T |
|
| Q |
201 |
agagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagata |
300 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28730497 |
agagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagata |
28730596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
42 |
cagagaaagaactgaaccacaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
113 |
Q |
| |
|
||||||||||| | |||| | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University