View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8663_high_9 (Length: 269)
Name: NF8663_high_9
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 108 - 263
Target Start/End: Original strand, 46208523 - 46208678
Alignment:
| Q |
108 |
tggatttgaattggaacatgattgctctcaacaccatatccaccattcttcatccactacccaacaacaatccgtcaattctcatctcgcaatgttcgaa |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46208523 |
tggatttgaattggaacatgactgctctcaacaccatatccaccattcttcatccactacccaacaacaatccgtcaattctcatctcgcaatgttcgaa |
46208622 |
T |
|
| Q |
208 |
gcggccaagacgaagcatgaggatcaaagtggctaccacaaagacctaacaccaaa |
263 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46208623 |
gcggcgaagacgaagcatgaggatcaaagtggctaccacaaagacctaacaccaaa |
46208678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 48962610 - 48962714
Alignment:
| Q |
167 |
cccaacaacaatccgtcaattctcatctcgcaatgttcgaagcggccaag---------acgaagcatgaggatcaaagtggctaccacaaagacctaac |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
48962610 |
cccaacaacaatccgtcaattctcatctcgcaatcctcgaagcggcaaagacgaatggaacgaagcatgggaatcaaagtggctaccac-aagacctaac |
48962708 |
T |
|
| Q |
258 |
accaaa |
263 |
Q |
| |
|
|||||| |
|
|
| T |
48962709 |
accaaa |
48962714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 46208453 - 46208493
Alignment:
| Q |
38 |
ttaaaaataaatgaaaatgtcatgtgtgtaactcacaattt |
78 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46208453 |
ttaaaaataaatgaaaatgcgatgtgtgtaactcacaattt |
46208493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 46209418 - 46209389
Alignment:
| Q |
27 |
taatttttgaattaaaaataaatgaaaatg |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46209418 |
taatttttgaattaaaaataaatgaaaatg |
46209389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 46208158 - 46208198
Alignment:
| Q |
6 |
atgagatggacatcacttgggtaatttttgaattaaaaata |
46 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
46208158 |
atgagatggacgccacgtgggtaatttttgaattaaaaata |
46208198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 17367989 - 17368039
Alignment:
| Q |
167 |
cccaacaacaatccgtcaattctcatctcgcaatgttcgaagcggccaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
17367989 |
cccaacaacaatccgtcaattctcatctcgcaatcctcgaagcggcgaaga |
17368039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University