View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_1 (Length: 841)
Name: NF8663_low_1
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 354 - 689
Target Start/End: Complemental strand, 19876412 - 19876077
Alignment:
| Q |
354 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgcacacattcacaaaaaatgtggcattaaattcataattcacaaaaaa |
453 |
Q |
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| T |
19876412 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgtacacattcacaaaaaacatggcattaaattgataattcacaaaaaa |
19876313 |
T |
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| Q |
454 |
cattatcactttatcaacagacaaataaataaggaatcttttgacaatacaacactttgattaatctttgtccatgcttatattgaaaaagaataaagaa |
553 |
Q |
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| T |
19876312 |
cattatcactttatcaacagacaaataaataaggaatcctttggcaatacaacactttgattaatctttgtccatgcttctattgaaaaagaataaagaa |
19876213 |
T |
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| Q |
554 |
ggatgcattttatttcttagaaatcaattaatccttcaaaataaaatgattaacccacaagatttccctgagccaataatccaagttcaatttctatcca |
653 |
Q |
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|||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19876212 |
ggatacattttattccttagaattcaattaatccttcaaaataaaatgatcaacccacaagatttccttgagccaataatccaagttcaatttctatcca |
19876113 |
T |
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| Q |
654 |
agcttctagttcaatctctactatttctactcacaa |
689 |
Q |
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| T |
19876112 |
agcttcttgttcaatctctattatttctactcacaa |
19876077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 19879428 - 19879323
Alignment:
| Q |
354 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgcacacattcacaaaaaatgtggcattaaattcataattcacaaaaaa |
453 |
Q |
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| T |
19879428 |
ttgtatctttatgaattaagtaatcaaagcacctttgctcgcacgcacgtgcgcacacattcacaaaaaacgtggcattaaattcataattcacaaaaaa |
19879329 |
T |
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| Q |
454 |
cattat |
459 |
Q |
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|||||| |
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| T |
19879328 |
cattat |
19879323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 19853477 - 19853566
Alignment:
| Q |
476 |
aaataaataaggaatcttttgacaatacaac-actttgattaatctttgtccatgcttatattgaaaaagaataaagaaggatgcatttt |
564 |
Q |
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| T |
19853477 |
aaataaataaggaatcctttgacaatacaactactttaattaatctttgttcatgcttctactgaaaaataataaagaaggatgcatttt |
19853566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 19875954 - 19875907
Alignment:
| Q |
354 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcac |
401 |
Q |
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| T |
19875954 |
ttgtatctttatgaattaaataatcaacgcacacttgctcgcacgcac |
19875907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 7174 - 7219
Alignment:
| Q |
218 |
tcatacacttatatgaataaaatttgacaaaacaaaagtgtgataa |
263 |
Q |
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| T |
7174 |
tcatacacttatatgaataaaatttggcaaaacaaaagtgtgataa |
7219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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