View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_10 (Length: 302)
Name: NF8663_low_10
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41812096 - 41811874
Alignment:
| Q |
1 |
tgcaaaaacatgggtatacggacacttgttagtctccatgtaatattgaaattttaaatgtggaaagaaaatgacatacagcctgccttttttattcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812096 |
tgcaaaaacatgggtatacggacacttgttagtctccacgtaatattgaaattttaaatgtggaaagaaaatgacatacagcctgccttttttattcctt |
41811997 |
T |
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| Q |
101 |
tgatttgctaatcaaaccacaattcacgtcacatgtagaattagaaactttctcaaccgttgttcaaatgattaccaaatttgcatgttcaagtaatgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41811996 |
tgatttgctaatcaaaccacaattcacgtcacatgtagaattagaaactttctcaaccgctgttcaaatgattaccaaatttgcatgttcaagtaatgtg |
41811897 |
T |
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| Q |
201 |
tattgtaccatattacatatatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41811896 |
tattgtaccatattacatatatc |
41811874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7606306 - 7606528
Alignment:
| Q |
1 |
tgcaaaaacatgggtatacggacacttgttagtctccatgtaatattgaaattttaaatgtggaaagaaaatgacatacagcctgccttttttattcctt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7606306 |
tgcaaaaacatcggtatacggacacttgttagtctccacgtaatattgaaattttaaatgtggaaagaaaatgacatacaacctgccttttttattcctt |
7606405 |
T |
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| Q |
101 |
tgatttgctaatcaaaccacaattcacgtcacatgtagaattagaaactttctcaaccgttgttcaaatgattaccaaatttgcatgttcaagtaatgtg |
200 |
Q |
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| T |
7606406 |
tgatttgctaatcaaaccacaattcacgtcacatgtagaattagaaactttctcaaccgctgttcaaatgattaccaaatttgcatgttcaagtaatgtg |
7606505 |
T |
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| Q |
201 |
tattgtaccatattacatatatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
7606506 |
tattgtaccatattacatatatc |
7606528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 14186418 - 14186329
Alignment:
| Q |
134 |
tgtagaattagaaactttctcaaccgttgttcaaatgattaccaaatttgcatgttcaagtaatgtgtattgtaccatattacatatatc |
223 |
Q |
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| T |
14186418 |
tgtagaattagaaactttctcaaccgatgttcaaatgattatcaaatttgcatgttcaagtaatgtgtattgtaccatattacatatatc |
14186329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 46557695 - 46557624
Alignment:
| Q |
88 |
ttttttattcctttgatttgctaatcaa-accacaattcacgtcacatgtagaattagaaactttctcaacc |
158 |
Q |
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|||| |||||||||||||||||| || | ||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
46557695 |
ttttctattcctttgatttgctagtctagaccacaattcatgtcatatgtacaattagaaactttctcaacc |
46557624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 37603298 - 37603369
Alignment:
| Q |
88 |
ttttttattcctttgatttgctaatcaa-accacaattcacgtcacatgtagaattagaaactttctcaacc |
158 |
Q |
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|||| |||||||||||||||||| || | ||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
37603298 |
ttttctattcctttgatttgctagtctagaccacaattcatgtcatatgtacaattagaaactttctcaacc |
37603369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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