View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_16 (Length: 266)
Name: NF8663_low_16
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 36085837 - 36086096
Alignment:
| Q |
1 |
catataattagattcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataata |
100 |
Q |
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| T |
36085837 |
catataattagattcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataata |
36085936 |
T |
|
| Q |
101 |
agaaacacaaagttcaaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085937 |
agaaacacaaagttcaaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaa |
36086036 |
T |
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| Q |
201 |
tccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaataatcta |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36086037 |
tccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaagaatcta |
36086096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40730171 - 40730108
Alignment:
| Q |
1 |
catataattagattcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagata |
64 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40730171 |
catataattagatttgaaatgatgtccaagttaacattctacatataacatcatgcaaaagata |
40730108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 48393077 - 48393017
Alignment:
| Q |
199 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaataatct |
259 |
Q |
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| T |
48393077 |
aatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaagaatct |
48393017 |
T |
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