View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_2 (Length: 556)
Name: NF8663_low_2
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 38206913 - 38207218
Alignment:
| Q |
15 |
acatcaaaccataaacaatatatcagccaaaaattatgaagcactaacaaaaacacagacactctggacatgacactgacacttcgacatcggtaaatat |
114 |
Q |
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| T |
38206913 |
acatcaaaccataaacaatatatcagccaaaaattatgaagcactaacaaaaacacagacattctggacatgacactgacacttcgacatcggtaaatat |
38207012 |
T |
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| Q |
115 |
ttgnnnnnnnnnnnnnnnnnnnnntgaatgtaatcacatgtatgtcgtgtcggacacaccttctataagaagtgtctagtaggcttaatacacactactc |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207013 |
ttgaaaaaataaaataaaattaattgaatgtaatcacatgtatgtcgtgtcggacacaccttctataagaagtgtctagtaggcttaatacacactactc |
38207112 |
T |
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| Q |
215 |
agcaagcaactaattaattacaaaggtgactaataaaaatctaggaatgaacttatacaaaggattaactaaatataaagctaatttatcttttaagcag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207113 |
agcaagcaactaattaattacaaaggtgactaataaaaatctaggaatgaacttatacaaaggattaactaaatataaagctaatttatcttttaagcag |
38207212 |
T |
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| Q |
315 |
catttg |
320 |
Q |
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|||||| |
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| T |
38207213 |
catttg |
38207218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 38207254 - 38207330
Alignment:
| Q |
359 |
gagtgtaacttttcagtaatacttgtgaacccatgctcattttccagaaattttgtaacaatatcttcaacacacac |
435 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207254 |
gagtgtaacttttaagtaatacttgtgaacccatgctcattttccagaaattttgtaacaatatcttcaacacacac |
38207330 |
T |
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