View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_25 (Length: 226)
Name: NF8663_low_25
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 9094846 - 9095051
Alignment:
| Q |
21 |
ggaaatttcaatgtcaaggtaaacaatttaaaattcaagcaaagtaaggtaggcaagtaaacgatttcaaagtttttgatttatatataagtaactttgc |
120 |
Q |
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| T |
9094846 |
ggaaatttcaatgtcaaggtaaacaatttaaaattcaagcaaagtaaggtaggcaagtaaacgatttcaaagtttttaatttatatataagtaactttgc |
9094945 |
T |
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| Q |
121 |
acttcataattgagtactccttcataattcatagtggagttgttattattgttaggcttcacatgggggaactaagatatataaattactataccttgtc |
220 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9094946 |
acttcataattgagtactccttcataattcatattggagttgttattattgttaggcttcacatgggggaactaagatatataaattactataccttgtc |
9095045 |
T |
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| Q |
221 |
tctgac |
226 |
Q |
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|||||| |
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| T |
9095046 |
tctgac |
9095051 |
T |
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