View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_3 (Length: 403)
Name: NF8663_low_3
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_3 |
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| [»] scaffold0465 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 28519657 - 28520050
Alignment:
| Q |
1 |
taaatcaacattcaaaacaaaagaattgaagaaatatgtttccaaagattgtgccgatgaaacaaccgaattgacccccc-tcctttcatctgcatggct |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
28519657 |
taaatcaacattcaaaacaaaagaattgaagaaatatgtttccaaagattgtgccgatgaaacaaccgaattgacccccccttctttcatccgcatggct |
28519756 |
T |
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| Q |
100 |
caccgcattgaaatccccaaccatacac-------catcaccaaaagtgtttttaatcaacacaagatttgcccacaatctttgtttcgccactaaatca |
192 |
Q |
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| T |
28519757 |
caccgcattgaaatccccaaccatacaccacacaccatcaccaaaagtgtttttaatcaacacaagatttgcccacaatctttgtttcgccactaaatca |
28519856 |
T |
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| Q |
193 |
catttcgagtaaatattcaccacaaaacatctcactttgttccttccccattctaaacaaactcccacgaagccttctcccgcaaaggagaaaagaaggt |
292 |
Q |
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| T |
28519857 |
catttcgagtaaatattcaccacaaaacatctcactttgttccttccccattctaaacaaactcccacgaagccttctcccgcaaaggagaaaagaaggt |
28519956 |
T |
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| Q |
293 |
tggaaccgaattttcgccaaatagaaatgatcccaccactattcctcacggtcggaagaaaggcccaatcacaatcatctcctccccaaatgct |
386 |
Q |
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| T |
28519957 |
tggaattggattttcgccaaatagaaatgatcccaccactattccccacagccggaagaaaggctcaatcacaatcatctcctccccaaatgct |
28520050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 20135668 - 20135540
Alignment:
| Q |
189 |
atcacatttcgagtaaatattcaccacaaaacatctcactttgttccttccccattctaaacaaactcccacgaagccttctcccgcaaaggagaaaaga |
288 |
Q |
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| T |
20135668 |
atcacatttgaaataaatgttcaccacaaaacatctttgtttcttacatccccattctaaacaaactcccacaaagccttcacccacaaaagagaaaagg |
20135569 |
T |
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| Q |
289 |
aggttggaaccgaattttcgccaaataga |
317 |
Q |
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| T |
20135568 |
atgtttgaaacggattttctccaaataga |
20135540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0465 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 6376 - 6524
Alignment:
| Q |
187 |
aaatcacatttcgagtaaatattcaccacaaaacatctcactttgttccttccccattctaaacaaactcccacgaagccttctcccgcaaaggagaaaa |
286 |
Q |
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| T |
6376 |
aaatcacatttggaataaatgttcaccacaaaacatctctctttattacttccccattctaaacaaactcccacaaaaccttcacccacaaaagagaaaa |
6475 |
T |
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| Q |
287 |
gaaggttggaaccgaattttcgccaaatagaaatgatcccaccactatt |
335 |
Q |
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| T |
6476 |
gaagattggaaatggattttctccaaatagaaataataccaccactatt |
6524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 27411403 - 27411464
Alignment:
| Q |
164 |
cccacaatctttgtttcgccactaaatcacatttcgagtaaatattcaccacaaaacatctc |
225 |
Q |
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| T |
27411403 |
cccacaatctttgttttgccaccaaatcacacttagagtaaatattcaccaccaaacatctc |
27411464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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