View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8663_low_8 (Length: 311)
Name: NF8663_low_8
Description: NF8663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8663_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 5934150 - 5933942
Alignment:
| Q |
10 |
ccaagccaatatcactagaacaacccaagtcggtttaagaaactgacaattaattcctcaactacttgcgtaacacgtaagatgattatttactagtttt |
109 |
Q |
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| T |
5934150 |
ccaagccaatatcactagaacaacccaagtcggtttaagaaactgacaagtaattcctcagttacttgcgtaacacgtaagatgattatttactagtttt |
5934051 |
T |
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| Q |
110 |
gaattaacttgcaacactccaccttaattcatgattagtcaatgcttcaatctcattcaagtctcttagtttcacgaacacttcaatttcgacagctttg |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
5934050 |
gaattaacttgcaacactccacctaaattcatgattagtcaatgcttcaatcccattcaagtctcttagtttcacgaacacttcaattttgtcagctttg |
5933951 |
T |
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| Q |
210 |
gttaagaca |
218 |
Q |
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||||||||| |
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| T |
5933950 |
gttaagaca |
5933942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 5933940 - 5933873
Alignment:
| Q |
248 |
ttcagtttcgatcctcctttacttatttgctcgctcgagtaa----tgaacatcgttcctatatggtt |
311 |
Q |
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| T |
5933940 |
ttcagtttcgatcttcctttacttatttgctcgctcgagtaatgaatgaacctcgttcctatatggtt |
5933873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 15038864 - 15038975
Alignment:
| Q |
128 |
ccaccttaattcatgattagtcaatgcttcaatctcattcaagtctcttagtttcacgaacacttcaatttcgacagctttggttaagacatcgacaatc |
227 |
Q |
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| T |
15038864 |
ccaccttaattcatt-ttagtcaatgcttcaatttccatcgagtctcttggtttcgtaaacacttcaatcttaacacctttggttagaacatctgcaatc |
15038962 |
T |
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| Q |
228 |
tgattctcacttt |
240 |
Q |
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| T |
15038963 |
tgattctcacttt |
15038975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27965543 - 27965587
Alignment:
| Q |
1 |
tcccagatcccaagccaatatcactagaacaacccaagtcggttt |
45 |
Q |
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| T |
27965543 |
tcccagatcccaagccaataccactaggccaacccaagtgggttt |
27965587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30883231 - 30883276
Alignment:
| Q |
1 |
tcccagatcccaagccaatatcactagaacaacccaagtcggttta |
46 |
Q |
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| T |
30883231 |
tcccaggtcccaagccaataccactagaccaacccaagtgggttta |
30883276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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