View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_high_1 (Length: 523)
Name: NF8664_high_1
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Original strand, 44731076 - 44731568
Alignment:
| Q |
12 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
111 |
Q |
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| T |
44731076 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
44731175 |
T |
|
| Q |
112 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagat |
211 |
Q |
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| T |
44731176 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaagctaacattttggtgattaaggatgttgaatgcaatgagat |
44731275 |
T |
|
| Q |
212 |
taagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgc |
311 |
Q |
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| T |
44731276 |
tgagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagaagttgggttatgctgatcttgtggaggaggttgc |
44731375 |
T |
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| Q |
312 |
tcttggggatgatgggaagattgtaaagatttcaggtgttaaggatatgggt-aagaccaaaactgtgcttgttcgtggatccaacttgcttgtgcttga |
410 |
Q |
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| T |
44731376 |
tcttggggatgatgggaagattgt-aagatttcaggtgttaaggatatgggtaaagaccacaactgtgcttgttcgtggatccaacttgcttgtgcttga |
44731474 |
T |
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| Q |
411 |
tgaagcgtagaggagtttgcatgatgctttgtgtgttgttaggtgtttggttggtaagaggtttttgattgctggtggtggagcgccccagatt |
504 |
Q |
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| T |
44731475 |
tgaagcgcagaggagtttgcatgatgctttgtgtgttgttaggtgtttggttggtaagaggtttttgattgctggtggtggagcgcccgagatt |
44731568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 491
Target Start/End: Original strand, 50701622 - 50702094
Alignment:
| Q |
12 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
111 |
Q |
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||||| ||||| ||||||||||||||||||||||| || |||||||| || || |||||| | ||||| || ||| | || |||||||||||||||| || |
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| T |
50701622 |
gattactctcagatggataggattttgaaggaagagaggagttatattttagggatgattaagaagatcaaggcaaccggttgtaatgtgttgttgattc |
50701721 |
T |
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| Q |
112 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagat |
211 |
Q |
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| T |
50701722 |
---aaaagagtattttgagagatgctgttactgatttgtctttgcattatcttgctaaagctaagattttagtgattaaagatgttgagcgtgacgagat |
50701818 |
T |
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| Q |
212 |
taagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgc |
311 |
Q |
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| || | ||||||||||| |||||||||||||||||| ||||||||||| |||||| || |||| ||||||||||||||||||||| || ||| || | |
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| T |
50701819 |
tgagttcattaccaagactcttaattgtttgcctatt-gctaatattgaacattttcgtgctgagaagttgggttatgctgatcttgtagaagagctttc |
50701917 |
T |
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| Q |
312 |
tcttggggatgatgggaagattgtaaagatttcaggtgttaaggatatgggtaagaccaaaactgtgcttgttcgtggatccaacttgcttgtgcttgat |
411 |
Q |
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| T |
50701918 |
tcttggg---gatgggaagattgtgaagatttctggtattaaggatatgggaaagaccacaactgtgcttgttcgtggatctaatttgcttgtgctcgat |
50702014 |
T |
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| Q |
412 |
gaagcgtagaggagtttgcatgatgctttgtgtgttgttaggtgtttggttggtaagaggtttttgattgctggtggtgg |
491 |
Q |
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| T |
50702015 |
gaagctgagcgaagtctgcatgatgctttgtgtgttgttaggtgtttggttgccaagaggtttttgattgcaggtggtgg |
50702094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 331 - 448
Target Start/End: Original strand, 20827039 - 20827156
Alignment:
| Q |
331 |
attgtaaagatttcaggtgttaaggatatgggtaagaccaaaactgtgcttgttcgtggatccaacttgcttgtgcttgatgaagcgtagaggagtttgc |
430 |
Q |
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||||| |||||||| ||| ||| ||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| ||||||| || | ||| ||| |
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| T |
20827039 |
attgtgaagatttctggtattagggatatgggaaagaccacaactgtgcttgttcgtggatctaatttgcttgtgctcgatgaaggtgagcgaagtctgc |
20827138 |
T |
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| Q |
431 |
atgatgctttgtgtgttg |
448 |
Q |
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| T |
20827139 |
acgatgctttgtgtgttg |
20827156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 20826776 - 20826854
Alignment:
| Q |
118 |
agagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgt |
196 |
Q |
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||||||||||||| |||| || | |||||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |
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| T |
20826776 |
agagtattttgagagatgttgttgctgatttgtctttgcattatcttgttaaagctaagtttttggtgattaaagatgt |
20826854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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