View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_low_10 (Length: 220)
Name: NF8664_low_10
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41249074 - 41249293
Alignment:
| Q |
1 |
attgtataccaccggtcatgtcaatagtaacacatcaaattcctaactacctatatcaaatttcggttgatgtattattatttaccatgaatgaagtaac |
100 |
Q |
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| T |
41249074 |
attgtatacaaccggtcatgtcaatagtaacacatcaaatttctagctacctatatcaaatttcggttgatgtattattatataccatgagtgaagtaac |
41249173 |
T |
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| Q |
101 |
tagcaaagacgagaagaatgatgaaggacgatcatcaacgggcttgaatccaatctcccatggtccccaacggtgaaaaactatgtcttgctctttttct |
200 |
Q |
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| T |
41249174 |
tagcaaagaagagaagaataatgaaggacgatcatcaacgggcttcaatccaatctcccatggtccccaacggtgaaaaactatgtcttgctctttttct |
41249273 |
T |
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| Q |
201 |
ctctctaaaatgagactagg |
220 |
Q |
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| T |
41249274 |
ctctctaaaatgagactagg |
41249293 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 9499367 - 9499435
Alignment:
| Q |
96 |
gtaactagcaaagacgagaagaatgatgaaggacgatcatcaacgggcttgaatccaatctcccatggt |
164 |
Q |
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| T |
9499367 |
gtaactagcaaagaagagaagaatgatgatggaggaacatcaacaagcttgaatccaagctccaatggt |
9499435 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 31999374 - 31999442
Alignment:
| Q |
95 |
agtaactagcaaagacgagaagaatgatgaaggacgatcatcaacgggcttgaatccaatctcccatgg |
163 |
Q |
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| T |
31999374 |
agtaactagcaaagaagagaagaatggtgaaggaggagcatcaacaatcttgaatccaagctccaatgg |
31999442 |
T |
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