View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8664_low_3 (Length: 522)
Name: NF8664_low_3
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 6638999 - 6639365
Alignment:
| Q |
1 |
agcagaaactaaacaagaccttatgacccaaagaggctaagaagtcattacatttgtgtatgtttcagttgataaggtgcaccactaggtagcaatctaa |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6638999 |
agcagaaaccaaacaagatcttatgacccaaagaggctaagaagtcaatacatttgtgtatgtttcagttgataaggtgcaccactaggtggcaatctaa |
6639098 |
T |
|
| Q |
101 |
acctttgagaagttgtagagcttcgtatcaacaatcaacatcaacaatatattaatgggaaggggtggatagggtttcaacctcagccgcgacccgccca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6639099 |
acctttgagaagttgtagagcttcgtatcaacaatcaacatcaacaatatattaatgggaaggggtggatagggtttcagcctcagccgcga-ccgccca |
6639197 |
T |
|
| Q |
201 |
atctttcgatttcgattgactggcatcgtttaactcatctaacggtgggtgagttcggatgggcctcctcttgaaccacaatttattgggatgccatttt |
300 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6639198 |
atctttgggtttcgattgactggcatcatttaactcatttaacggtgggtgagtttggatgggcctcctcttgaaccacaatttattgggatgccatttt |
6639297 |
T |
|
| Q |
301 |
tctatgtatagacctagggtatacgtaataatattgtgcgacgttgttttacagagatggagttatac |
368 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6639298 |
gctatgtatagacctaaggtatacgtaataatattgtgcgacgttgttttacagagatggagttatac |
6639365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 373 - 504
Target Start/End: Original strand, 6639404 - 6639538
Alignment:
| Q |
373 |
tgcgtcgctctcccttcatctaacctct--caatctcctatttttcctccatcaacttcctcttagactcgaaccaaatcaggttaatattcctatcatc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6639404 |
tgcgtcgctctcccttcatctaacctctctcaatctcctatttttcctccatcaacttcctcttagactcaaaccaaatcaggttaatattcctatcatc |
6639503 |
T |
|
| Q |
471 |
tttcc-attcatatcaaggtaacatagcactaaat |
504 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6639504 |
tttccaattcatatcaaggtaacatagcactaaat |
6639538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University