View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_low_4 (Length: 408)
Name: NF8664_low_4
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 43263926 - 43263565
Alignment:
| Q |
18 |
gaatctgctataataacctagctataccttttatgaacaatatttgatgcccctatcactcattcctaattgtcttttcgaactaattttgtacatgatt |
117 |
Q |
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| T |
43263926 |
gaatctgctataataacctagctataccttttatgaacaatatttgatgcctctatcactcattcctaattgtcttctcgaactaattttgtacatgatt |
43263827 |
T |
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| Q |
118 |
tnnnnnnnnnttcaaatcaaaatttaatttatctggtctagaggatcaggagcagctacttaattagctagcccaattaatatatgtaaatcacactaat |
217 |
Q |
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| T |
43263826 |
taaaaaaaa-ttcaaatcaaaatttaatttatctggtctagaggatcaggagcagctacttaattagctagcccaattgatatatgtaaatcacactaat |
43263728 |
T |
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| Q |
218 |
taatttcactcataattggggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctt |
317 |
Q |
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| T |
43263727 |
taatttcactcataattggggtatgaagaaagcaaattactaggtatgcatggagaattcctccatgccctagcatgcatcttaagtatctcccttgctt |
43263628 |
T |
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| Q |
318 |
tctccttagtcttacttccacaatcaacttgaagaaccaaacaaagcttagccacaacaccaa |
380 |
Q |
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| T |
43263627 |
tctccttagtcttacttccacaatcaacttgaagaaccaaacaaagcttagccacaacaccaa |
43263565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 236 - 380
Target Start/End: Original strand, 24889913 - 24890057
Alignment:
| Q |
236 |
gggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttc |
335 |
Q |
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| T |
24889913 |
gggtatgaagcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttc |
24890012 |
T |
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| Q |
336 |
cacaatcaacttgaagaaccaaacaaagcttagccacaacaccaa |
380 |
Q |
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| T |
24890013 |
cactatcaacttgaagaaccaaacaaagcttagcaacaacaccaa |
24890057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 236 - 380
Target Start/End: Complemental strand, 24900054 - 24899910
Alignment:
| Q |
236 |
gggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttc |
335 |
Q |
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|||||||||| ||| |||||| ||||||||| |||||||| |||||| | | | ||||| ||||| |||||||||||||||||||| | |||| ||| |
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| T |
24900054 |
gggtatgaagcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttc |
24899955 |
T |
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| Q |
336 |
cacaatcaacttgaagaaccaaacaaagcttagccacaacaccaa |
380 |
Q |
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| T |
24899954 |
cactatcaacttgaagaaccaaacaaagcttagcaacaacaccaa |
24899910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 236 - 380
Target Start/End: Complemental strand, 24907513 - 24907369
Alignment:
| Q |
236 |
gggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttc |
335 |
Q |
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|||||||||| ||| |||||| ||||||||| |||||||| |||||| | | | ||||| ||||| |||||||||||||||||||| | |||| ||| |
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| T |
24907513 |
gggtatgaagcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttc |
24907414 |
T |
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| Q |
336 |
cacaatcaacttgaagaaccaaacaaagcttagccacaacaccaa |
380 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
24907413 |
cactatcaacttgaagaaccaaacaaagcttagcaacaacaccaa |
24907369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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