View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_low_5 (Length: 379)
Name: NF8664_low_5
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 41854703 - 41855006
Alignment:
| Q |
18 |
gtaatcgagaagatcgttaacaatggaagcggattgggattttgaagatgtggaattggtggagcagaagacacgtcgtg------------atgaattt |
105 |
Q |
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| T |
41854703 |
gtaatcgagaagatcgttaacaatggaagcggattgggattttgaagatgtggaattggtggagcagaagacacgtcgtggaatgaagggcgatgaattt |
41854802 |
T |
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| Q |
106 |
gggagattgcggtagcgaagaaatggtgacgatggtttgagattgagtttgagtgatggagatgaagaatgcagaagaagaatgtgcggtcgagttattg |
205 |
Q |
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| T |
41854803 |
gggagatttcggtagcgaagaaatggtgacgatggtttgagattgagtttgagtgatggagatgaagagtgcagaagtagaatgtgcggtcgagttattg |
41854902 |
T |
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| Q |
206 |
ttgatgccatgatgtttcaaactcagtcccaacactcataacaaacacccaacctctgtcaactagtattggatcaaggtggatatcgttagaatcgttg |
305 |
Q |
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| T |
41854903 |
ttgatgccatgatgtttcaaacttagtcccaacactcataacaaacacccaacctctgtcaactagtattgcatcaaggtggatatcgttagaatcgttg |
41855002 |
T |
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| Q |
306 |
atga |
309 |
Q |
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|||| |
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| T |
41855003 |
atga |
41855006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 41855055 - 41855115
Alignment:
| Q |
318 |
ggtgacccaaaaaataagtttaatgagtaaataacaagtcattatgtgatgtccatctcat |
378 |
Q |
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| T |
41855055 |
ggtgacccaaaaaataagtttaatgagtaaataacaagtcattatgtgatatccgtctcat |
41855115 |
T |
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