View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_low_6 (Length: 357)
Name: NF8664_low_6
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_6 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 31241110 - 31240754
Alignment:
| Q |
1 |
cgaacaaattgatttctcatgtttgtgtttcaatttgcagaattatttcattcataatttcgtaatagttatgttttttgaagaaatcatcacaaacgca |
100 |
Q |
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| T |
31241110 |
cgaacagattgatttctcgtgtttgtgttccaatttgcagaattatttcattcataatttcgtaatagttatgttttttgaagaaatcatcacaaacgca |
31241011 |
T |
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| Q |
101 |
actctctagatttacggcccatatatggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctcatcaaacattccttatttta |
200 |
Q |
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| T |
31241010 |
actctctagatttacggcccatatatggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctcatcaaacattccttatttta |
31240911 |
T |
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| Q |
201 |
aagatatcatctccattcgtttcatttacactaaataannnnnnncttctacatccaatgtccatccaaaccctatcatagatgactacttcatgtttcc |
300 |
Q |
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| T |
31240910 |
aagacatcatctccattcgtttcatttacactaaataattttttccttctacatccaatgttcatccaaaccctatcatagattactacttcatgtttcc |
31240811 |
T |
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| Q |
301 |
attcgaaatcttgtgcaattttaatgctcacacaaccatggatcccgattacaactt |
357 |
Q |
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| T |
31240810 |
attcgaaatcctgtgcaattttaatgctcacacaaccatggatcccgattacaactt |
31240754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 125 - 357
Target Start/End: Original strand, 35418181 - 35418415
Alignment:
| Q |
125 |
atggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctcatcaaacattccttattttaaagatatcatctccattcgtttca |
224 |
Q |
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| T |
35418181 |
atggattcctccttcagcctaagtgtgactcctatagaatcaactggacctatctcatcaaacattccttgttttaaagatatcatctccattcgtttca |
35418280 |
T |
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| Q |
225 |
tttacact--aaataannnnnnncttctacatccaatgtccatccaaaccctatcatagatgactacttcatgtttccattcgaaatcttgtgcaatttt |
322 |
Q |
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| T |
35418281 |
tttacactaaaaatcaactttttcttccacatccaatatcaacctaaaccctatcatcgatgactacttcatgtttccatccaatatcttatgcaatttt |
35418380 |
T |
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| Q |
323 |
aatgctcacacaaccatggatcccgattacaactt |
357 |
Q |
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| T |
35418381 |
aatgcacatgcaaccatggatccctatttcaactt |
35418415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 35422562 - 35422738
Alignment:
| Q |
125 |
atggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctcatcaaacattccttattttaaagatatcatctccattcgtttca |
224 |
Q |
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||||||||| |||||| | ||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35422562 |
atggattcctccttcagcctaagtgtgactcctatagaatcatcccgacctatctcatcaaacattccttgttttaaagatatcatctccattcgtttca |
35422661 |
T |
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| Q |
225 |
tttacactaaataannnnnnncttctacatccaatgtccatccaaaccctatcatagatgactacttcatgtttcca |
301 |
Q |
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| T |
35422662 |
tttaccctaactcaactttttcttctacatccaatgtccacccaaaccctatcatcgatgactacttcatgtttcca |
35422738 |
T |
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