View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_low_7 (Length: 352)
Name: NF8664_low_7
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 11639394 - 11639556
Alignment:
| Q |
1 |
aaataatgagatatgctatatggcatatgacacaagaatgctagatcaacatgcaatttacctcataaaaagaaaatcaaagactgtaaaggtcaaaacc |
100 |
Q |
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| T |
11639394 |
aaataatgagatatgctatatggcatatgacacaagaatgctagatcaacatgcaatttacctcataaaaagaaaatcaaagactgtaaaggtcaaaacc |
11639493 |
T |
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| Q |
101 |
caaaactctaaagcagtaatagttactggaagacaaatatgagacaagacaaaaaaattatca |
163 |
Q |
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| T |
11639494 |
caaaactctaaagcagtactagttactggaagacaaatatgagacaagacaaaaaaattatca |
11639556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 11639572 - 11639709
Alignment:
| Q |
198 |
aagtcatatactatggtaatataatggtagttgacaatttcctcgaaaggcatgcaaatagtttatataagcacaccagcaaagcaagaaaaggaatcta |
297 |
Q |
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| T |
11639572 |
aagtcatatactatggtaatataatggtagttgacaatttcctcgaaaggcatgcaaatagtttatataagcacaccagcaaagcaagaaaaggaatata |
11639671 |
T |
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| Q |
298 |
caaatcttatcatcaaaagagagaaaatactcagaaat |
335 |
Q |
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| T |
11639672 |
caaatcttatcatcaaaagagagaaaatactcagaaat |
11639709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 11621039 - 11621131
Alignment:
| Q |
216 |
atataatggtagttgacaatttcctcgaaaggcatgcaaatagtttatataagcacaccagcaaagcaagaaaaggaatctacaaatcttatca |
309 |
Q |
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| T |
11621039 |
atataatgatggttgacaatttccttggaagacatgcaa-tagtttatataagcacaccagcagatcaagaaaaagaatccataaatctcatca |
11621131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 11638852 - 11638896
Alignment:
| Q |
209 |
tatggtaatataatggtagttgacaatttcctcgaaaggcatgca |
253 |
Q |
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| T |
11638852 |
tatgataatataatggtagttgacaatttccttgaaaggcatgca |
11638896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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