View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8664_low_8 (Length: 319)

Name: NF8664_low_8
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8664_low_8
NF8664_low_8
[»] chr5 (5 HSPs)
chr5 (1-304)||(41249283-41249592)
chr5 (195-304)||(29069470-29069580)
chr5 (205-273)||(26708330-26708399)
chr5 (205-273)||(26978064-26978133)
chr5 (197-264)||(7032937-7033005)
[»] chr3 (5 HSPs)
chr3 (196-282)||(54378395-54378482)
chr3 (201-304)||(50093631-50093735)
chr3 (195-292)||(11559843-11559941)
chr3 (195-292)||(11569112-11569210)
chr3 (205-265)||(22604492-22604553)
[»] chr1 (5 HSPs)
chr1 (195-283)||(28007580-28007669)
chr1 (196-261)||(33372293-33372359)
chr1 (195-294)||(25878795-25878895)
chr1 (228-292)||(10917708-10917772)
chr1 (196-279)||(30936705-30936785)
[»] chr8 (4 HSPs)
chr8 (195-302)||(4975591-4975699)
chr8 (195-302)||(15075278-15075386)
chr8 (195-304)||(20990915-20991027)
chr8 (205-261)||(2751481-2751538)
[»] chr2 (3 HSPs)
chr2 (190-304)||(8907806-8907919)
chr2 (195-283)||(29454480-29454569)
chr2 (195-302)||(30870132-30870240)
[»] chr4 (1 HSPs)
chr4 (206-283)||(22433607-22433685)
[»] scaffold0092 (1 HSPs)
scaffold0092 (214-304)||(54086-54176)
[»] chr7 (2 HSPs)
chr7 (195-265)||(8543597-8543666)
chr7 (195-292)||(42594529-42594627)
[»] chr6 (1 HSPs)
chr6 (103-187)||(12062521-12062605)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 41249283 - 41249592
Alignment:
Q  1 atgagactagggattaaaaactatatataaaaaatcggattacagctctattgataccagtataaaaagtgcaggttcgttagttgaaatcatgcatgcc 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  41249283 atgagactagggattaaaaactatatgtaaaaaatctgattacagctctattcataccagtataaaaagtgcaggttcgttaggtaaaatcatgcatgcc 41249382  T
Q  101 tgcga-----ggtttcttcaagtgaagggaaaaggtaattggtcttcaaatagtcactaaaccgttttacttccttggatgaggtgttgctcaccccatg 195  Q
    |||||     ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |    
T  41249383 tgcgaatcgaggtttcttcaaatgaagggaaaaggtaattggtcttcaaatagtcactaaaccattttacttcgttggatgaggtgttgctcaccccagg 41249482  T
Q  196 cacggatctaatgtgggggcaat-gggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgatc 294  Q
    |||||||||||||||||| |||| |||||||| ||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41249483 cacggatctaatgtggggacaatggggtcaagtgaccccacttgcctccacatgtgtattgtatttttaacccaaaattttatatatatttaatttgatc 41249582  T
Q  295 tctctttata 304  Q
    ||||||||||    
T  41249583 tctctttata 41249592  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 29069580 - 29069470
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 293  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||  ||||||  ||||||||||| |||||     
T  29069580 gcacagatctagtgtgggggcaatggggtcaagcgaccccacttgcctccacatgggtattgtatttttaacccaaaattagatatatatttagtttgac 29069481  T
Q  294 ctctctttata 304  Q
    |||||||||||    
T  29069480 ctctctttata 29069470  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 26708330 - 26708399
Alignment:
Q  205 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaatt 273  Q
    |||||| |||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||  |||||||    
T  26708330 aatgtgagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattgtatttttaatctaaaatt 26708399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 26978064 - 26978133
Alignment:
Q  205 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaatt 273  Q
    |||||| |||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||  |||||||    
T  26978064 aatgtgagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattgtatttttaatctaaaatt 26978133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 7033005 - 7032937
Alignment:
Q  197 acggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaa 264  Q
    |||||| || ||||||||||||||| |||| |||||||||||| |||| | ||| ||||||||||||||    
T  7033005 acggatgtagtgtgggggcaatggggtcaaccgaccccacttgcctccacttgtttattgtatttttaa 7032937  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 54378482 - 54378395
Alignment:
Q  196 cacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatata 282  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||  |||||| ||||||||    
T  54378482 cacggatctagtgtggggacaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttttaacccaaaattatatatata 54378395  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 50093735 - 50093631
Alignment:
Q  201 atctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgatctctct 299  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||   ||||||  |||||||| || ||||| | ||||    
T  50093735 atctagtgtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttttaatccaaaattagatatatatctagtttgaccactct 50093636  T
Q  300 ttata 304  Q
    |||||    
T  50093635 ttata 50093631  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 11559941 - 11559843
Alignment:
Q  195 gcacggatctaatgtgggggcaat-gggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 292  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||  |||| |||||||||||||||||||||  ||||||  |||||||| || |||||    
T  11559941 gcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattgtatttttaacccaaaattagatatatatctagtttga 11559843  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 11569210 - 11569112
Alignment:
Q  195 gcacggatctaatgtgggggcaat-gggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 292  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||  |||| |||||||||||||||||||||  ||||||  |||||||| || |||||    
T  11569210 gcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattgtatttttaacccaaaattagatatatatctagtttga 11569112  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 22604553 - 22604492
Alignment:
Q  205 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaac 265  Q
    ||||||||||||||||| ||||||||||||||||| |||| | ||||||||| |||||||||    
T  22604553 aatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattgcatttttaac 22604492  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 28007669 - 28007580
Alignment:
Q  195 gcacggatctaatgtgggggcaatgg-gtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatat 283  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||| |||| |||||||| ||||||||||||| ||||||  ||||||||    
T  28007669 gcacggatctagtgtgggggcaatggagtcaagccaccccacttgcctccacatgtgtactgtatttttaactcaaaattagatatatat 28007580  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 33372293 - 33372359
Alignment:
Q  196 cacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttt 261  Q
    ||||||||||  |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  33372293 cacggatctagggtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttt 33372359  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 25878895 - 25878795
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 293  Q
    ||||||||  |||||||| |||||||| ||||||||||||||||| |||| | ||| ||||| |||||||||  ||||||  |||||| | |||||||||    
T  25878895 gcacggatacaatgtgggagcaatggggtcaagcgaccccacttgcctccacttgtatattgcatttttaacccaaaattaaatatatgtctaatttgat 25878796  T
Q  294 c 294  Q
    |    
T  25878795 c 25878795  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 10917708 - 10917772
Alignment:
Q  228 gaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 292  Q
    ||||||||||| |||| |||||||||| |||||||||| |||||||  ||||| ||||| |||||    
T  10917708 gaccccacttgcctccacatgtgtattatatttttaacctaaaattagatatagatttagtttga 10917772  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 30936705 - 30936785
Alignment:
Q  196 cacggatctaatgtgggggcaatgg-gtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatat 279  Q
    |||||||| |||||||||||||||| ||||| |||||||||||| |||| | ||    ||||||||||||| |||||||| ||||    
T  30936705 cacggatccaatgtgggggcaatggagtcaaccgaccccacttgcctccacttg----ttgtatttttaacctaaaatttgatat 30936785  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 4975699 - 4975591
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 293  Q
    ||||||||  ||| ||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||  ||||||  |||||| | ||||||||     
T  4975699 gcacggatacaatatgggggcaatggggtcaagcgaccccacttgtatccacttgtgtattgtatttttaacccaaaattaaatatatgtctaatttgac 4975600  T
Q  294 ctctcttta 302  Q
    |||||||||    
T  4975599 ctctcttta 4975591  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 15075278 - 15075386
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 293  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||| |||| | ||||||||| |||||||||  ||||||  |||||||| || ||||||    
T  15075278 gcacggatacaatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattgcatttttaacccaaaattagatatatatctagtttgat 15075377  T
Q  294 ctctcttta 302  Q
    | |||||||    
T  15075378 ccctcttta 15075386  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 20991027 - 20990915
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaatt--ttatatatatttaatttg 291  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| ||||||   ||||||   ||||||||| |||||||    
T  20991027 gcacggatctagtgtgggggcaacggggtcaagcgaccccacttgcctccacatgtgtattgtacttttaatgcaaaattagatatatatatctaatttg 20990928  T
Q  292 atctctctttata 304  Q
    | | |||||||||    
T  20990927 acccctctttata 20990915  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2751481 - 2751538
Alignment:
Q  205 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttt 261  Q
    ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||    
T  2751481 aatgtgggggcaatggggtcaagcgaccccacttgcctccacctgtgtattgtatttt 2751538  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 304
Target Start/End: Original strand, 8907806 - 8907919
Alignment:
Q  190 cccatgcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaat 288  Q
    |||| ||||||||||| ||||||  ||||||| ||||||||||||||||| |||| ||||||||||| |||||||||  ||||||  ||||||||||| |    
T  8907806 cccaggcacggatctagtgtggg--caatggggtcaagcgaccccacttgcctccacatgtgtattgaatttttaacccaaaattagatatatatttagt 8907903  T
Q  289 ttgatctctctttata 304  Q
    ||||  ||||||||||    
T  8907904 ttgacttctctttata 8907919  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 29454569 - 29454480
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatat 283  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||| || |  ||||||||||||||||||||  |||||| |||||||||    
T  29454569 gcacgaatctagtgtgggagcaatggggtcaagcgaccccacttgccttcaaatgtgtattgtatttttaacccaaaattatatatatat 29454480  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 30870132 - 30870240
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 293  Q
    ||||||||  ||||||||||||||||| ||||| ||||||||||| || | | ||||||||| |||||||||  ||||||  |||||| | || |||||     
T  30870132 gcacggatacaatgtgggggcaatggggtcaagtgaccccacttgccttcacttgtgtattgcatttttaacccaaaattaaatatatgtctagtttgac 30870231  T
Q  294 ctctcttta 302  Q
    | |||||||    
T  30870232 ccctcttta 30870240  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 22433607 - 22433685
Alignment:
Q  206 atgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatat 283  Q
    |||||||||||||||| ||||||||||||||||| |||| | ||| |||||||||||||||  |||||| |||||||||    
T  22433607 atgtgggggcaatggggtcaagcgaccccacttgcctccacctgtttattgtatttttaacccaaaattatatatatat 22433685  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 54176 - 54086
Alignment:
Q  214 gcaatgggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgatctctctttata 304  Q
    |||||||||||| ||||  || ||| || | ||| |||||||||||||||| ||||||||| |||||||| || ||| |||  ||||||||    
T  54176 gcaatgggtcaaacgacttcatttgccttcacatatgtattgtatttttaatttaaaatttgatatatatctagtttaatccttctttata 54086  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 8543597 - 8543666
Alignment:
Q  195 gcacggatctaatgtgggggcaatgggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaac 265  Q
    ||||| ||||| |||||||  ||||||||||||||||||||||| || |  || |||||||||||||||||    
T  8543597 gcacgaatctagtgtggggataatgggtcaagcgaccccacttgccttcatat-tgtattgtatttttaac 8543666  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 42594627 - 42594529
Alignment:
Q  195 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 292  Q
    |||| |||| ||||||| ||||||||| |||| |||||||||||| |||| | ||  ||||||||||||||| |||| ||| |||| ||| || |||||    
T  42594627 gcacagatccaatgtggtggcaatggggtcaaccgaccccacttgcctccacttgcttattgtatttttaacctaaattttgatatttatgtagtttga 42594529  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 12062521 - 12062605
Alignment:
Q  103 cgaggtttcttcaagtgaagggaaaaggtaattggtcttcaaatagtcactaaaccgttttacttccttggatgaggtgttgctc 187  Q
    |||||||||||||| || | |||||| | | ||||||||| ||||||||||||| ||  ||| ||| ||||| || |||||||||    
T  12062521 cgaggtttcttcaattggaaggaaaatgcagttggtcttctaatagtcactaaatcgccttagttcgttggaagaagtgttgctc 12062605  T

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