View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8664_low_9 (Length: 312)
Name: NF8664_low_9
Description: NF8664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8664_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 880200 - 880475
Alignment:
| Q |
22 |
gactaaacacagctcaacacacgacagtaaatcacaagtagcaatattttatcaaaatctagctttattttattaataaaggtgcattacagcagcatct |
121 |
Q |
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| T |
880200 |
gactaaacacagctcaacacacgacagtaaatcacaagtagcaatattttatcaaaatctagctttattttattaataaaggtgcattacagcagcatct |
880299 |
T |
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| Q |
122 |
agatggaggaaatgttcttgtaacattaacatatgtttggtgttcttaaatgataataaggagcatttttatttataattaattacagataacacatgca |
221 |
Q |
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| T |
880300 |
agatggaggaaatgttcttgtaacattaacatatgtttggtgttcttaaatgataataaggagcatttttatttataattaattacagataacacatgca |
880399 |
T |
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| Q |
222 |
ttatcaaagtaactaggagtcttccttgcttgcaacctccaagccattacctacaaatacaattatagtcattcat |
297 |
Q |
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| T |
880400 |
ttatcaaagtaactaggagtcttccttgcttgcaacctccaagccattacctacaaatacaattatagtcattcat |
880475 |
T |
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