View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8665_high_3 (Length: 340)
Name: NF8665_high_3
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 23045858 - 23045537
Alignment:
| Q |
1 |
tccaaaaattcttaaattagaataatcaacaggattacctgaccaaatctcttctggaactttgaagtcaagtgccgaatgtggagaacggttgaccaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23045858 |
tccaaaaattcttaaattagaataatcaacaggattacctgaccaaatctcttctggaactttgaagtcaagtgctgaatgtggagaacggttgaccaag |
23045759 |
T |
|
| Q |
101 |
taacatgcagtagatgctgcctcggcccaaagatcacgtcgatgccataacccagcatttgagagcatacaccgagttctctcaagtagagttctgttca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |
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| T |
23045758 |
taacatgcagtagatgctgcctcggctcaaagatcacgtcgatgccataacccaacatttgagagcatacatcaagctctctcaagtagagttctgttca |
23045659 |
T |
|
| Q |
201 |
ttcgttctgcaacaccgttttgctggggattcctcggaatggttttgtgtctagcaataccatgatttgagcagaacttgttaaagtcaccactgcagaa |
300 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23045658 |
ttcgttatgcaacaccgttttgctggggattcctcataatggttttgtgtctagcaataccatgatttgagcagaactcgttaaagtcaccactgcagaa |
23045559 |
T |
|
| Q |
301 |
ctctaatccattatctgttctg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
23045558 |
ctctaatccattatctgttctg |
23045537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 32 - 322
Target Start/End: Original strand, 3075378 - 3075668
Alignment:
| Q |
32 |
ggattacctgaccaaatctcttctggaactttgaagtcaagtgccgaatgtggagaacggttgaccaagtaacatgcagtagatgctgcctcggcccaaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3075378 |
ggattacctgaccaaatctcttctggaactttgaagtcaagtgccgaatgtggagaacggttgaccaagtaacatgcagtagatgctgcctcggcccaaa |
3075477 |
T |
|
| Q |
132 |
gatcacgtcgatgccataacccagcatttgagagcatacaccgagttctctcaagtagagttctgttcattcgttctgcaacaccgttttgctggggatt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3075478 |
gatcacgtcgatgccataacccagcatttgagagcatacaccgagttctctcaagtagagttctgttcattcgttttgcaacaccgttttgctggggatt |
3075577 |
T |
|
| Q |
232 |
cctcggaatggttttgtgtctagcaataccatgatttgagcagaacttgttaaagtcaccactgcagaactctaatccattatctgttctg |
322 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3075578 |
cctcgggatggttttgtgtctagcaataccatgatttcagcagaactcgttaaagtcaccactgcagaactctaatccattatatgttctg |
3075668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29473158 - 29472841
Alignment:
| Q |
1 |
tccaaaaattcttaaattagaataatcaacaggattacctgaccaaatctcttctggaactttgaagtcaagtgccgaatgtggagaacggttgaccaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
29473158 |
tccaaaaattcttaaattagaataattaacaggattaccggaccaaatctcttctggaactttgaagtcaactgccaaatgtggagaacggttgaccaag |
29473059 |
T |
|
| Q |
101 |
taacatgcagtagatgctgcctcggcccaaagatcacgtcgatgccataacccagcatttgagagcatacaccgagttctctcaagtagagttctgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
29473058 |
taacatgcagtagatgctgcctcggcccaaagatcacgccgatgccataaccaagcatttgagagcatacaccgagctctctcaagtagagtcctgttca |
29472959 |
T |
|
| Q |
201 |
ttcgttctgcaacaccgttttgctggggattcctcggaatggttttgtgtctagcaataccatgatttgagcagaacttgttaaagtcaccactgcagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
29472958 |
ttcgttctgcaacaccgttttgctagggattcctcggaatggttttgtgtctagcaataccatgatttgagtagaactcgttaaagtcaccaatgcagaa |
29472859 |
T |
|
| Q |
301 |
ctctaatccattatctgt |
318 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
29472858 |
ctctaatccattatctgt |
29472841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 15239561 - 15239879
Alignment:
| Q |
1 |
tccaaaaattcttaaattagaataatcaacaggattacctgaccaaatctcttctggaactttgaagtcaagtgccgaatgtggagaacggttgaccaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15239561 |
tccaaaaattcttaaattagaataatcaacaagattacctgaccaaatatcttctggaactttgaagtcaagtgctgaatgtggagaacggttgaccaag |
15239660 |
T |
|
| Q |
101 |
taacatgcagtagatgctgcctcggcccaaagatcacgtcgatgccataacccagcatttgagagcatacaccgagttctctcaagtagagttctgttca |
200 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||| |
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| T |
15239661 |
tgacatgcagtagatgctgcctcgacccaaagatcacgtcaattctataacccagcatttgagagcatacatcgagctctctcaagtagagtcctgatca |
15239760 |
T |
|
| Q |
201 |
ttcgttctgcaacaccgttttgctggggattcctcggaatggttttgtgtctagcaataccatgatttgagcagaacttgttaaagtcaccactgcagaa |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||| |
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| T |
15239761 |
ttcgttctgcaacaccgttttgttggggattccttggaatggttttgtgtctagcaataccatgatttgtgcagaactcattaaagtcactactacagaa |
15239860 |
T |
|
| Q |
301 |
ctctaatccattatctgtt |
319 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
15239861 |
ctctaatcaattatctgtt |
15239879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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