View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8665_high_4 (Length: 283)
Name: NF8665_high_4
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 31191313 - 31191538
Alignment:
| Q |
44 |
gttggatgagaataatgcaaagttccatatattcactcattaaattatttgtaatatttgctttaacaacaatctttttgtattgaatgaaatttattat |
143 |
Q |
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| T |
31191313 |
gttggatgagaataatgcaaagttccatatattcactcattaaattatttgtaatatttgctttaacaacaatctttttgtattgaatgaaatttattat |
31191412 |
T |
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| Q |
144 |
gtcattctttatgaaagtcattctcaaaataatatgatcaactttaattttactcttaataatagagatccttttttctatgtgagacccttaaaaataa |
243 |
Q |
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| T |
31191413 |
gtcattctttatgaaagtcattctcaaaataatatgatcaactttaattttactcttaataatagagatccttttttctatgtgagacccttaaaaataa |
31191512 |
T |
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| Q |
244 |
tattgatgattctatagaaaagaatg |
269 |
Q |
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| T |
31191513 |
tattgatgattctatagaaaagaatg |
31191538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 31205326 - 31205404
Alignment:
| Q |
191 |
ttttactcttaataatagagatccttttttctatgtgagacccttaaaaataatattgatgattctatagaaaagaatg |
269 |
Q |
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| T |
31205326 |
ttttactcttaataatagagatccttttttctatgtgtgacccttaaaaataatattgatgattctataaaaaagaatg |
31205404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 31173780 - 31173830
Alignment:
| Q |
52 |
agaataatgcaaagttccatatattcactcattaaattatttgtaatattt |
102 |
Q |
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| T |
31173780 |
agaacaatgcatagttccatatattcactcatcaaattgtttgtaatattt |
31173830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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