View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8665_high_5 (Length: 249)
Name: NF8665_high_5
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 26002353 - 26002384
Alignment:
| Q |
192 |
aaggtcaatcattaaaacaagttggcatctac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26002353 |
aaggtcaatcattaaaacaagttggcatctac |
26002384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 21037214 - 21037185
Alignment:
| Q |
194 |
ggtcaatcattaaaacaagttggcatctac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21037214 |
ggtcaatcattaaaacaagttggcatctac |
21037185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University