View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8665_high_6 (Length: 242)
Name: NF8665_high_6
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 33382632 - 33382851
Alignment:
| Q |
7 |
gaagcagagaaagcagaactgaagagttttggagtggttgtaaacagcttctatgaacttgaaaatgtttatgcagagtattacaggaaagtacttggaa |
106 |
Q |
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| T |
33382632 |
gaagcaaagaaagcagaactgaagagttttggagtggttgtaaacagcttctatgaacttgaaaatgtttatgcagagtattacaggaaagtacttggaa |
33382731 |
T |
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| Q |
107 |
gaaaagcttggcatattggtcctttatctctttgcaataaggatatagaggaaaaagcaaatagaggaagagaagattctattcatcaccatgactgcct |
206 |
Q |
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| T |
33382732 |
gaaaagcttggcatattggtcctttatctctttgcaataaggatatagaggaaaaagcaaatagaggaagagaagattctattcatcaccatgagtgcct |
33382831 |
T |
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| Q |
207 |
aaaatggcttgacatgaaga |
226 |
Q |
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| T |
33382832 |
aaaatggcttgacatgaaga |
33382851 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 27689150 - 27689074
Alignment:
| Q |
52 |
agcttctatgaacttgaaaatgtttatgcagagtattacaggaaagtacttggaagaaaagcttggcatattggtcc |
128 |
Q |
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| T |
27689150 |
agcttctatgagctcgagaatgtttatgcagattattatagagaggtacttggaataaaagaatggcatataggtcc |
27689074 |
T |
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