View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8665_low_2 (Length: 578)
Name: NF8665_low_2
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 39040285 - 39040828
Alignment:
| Q |
1 |
gtaaaagatgatgtaatgaaaatatattgctggtttgagtttgtaatgtgtaccgaaagttatagtgctagtattttt-aatttgtatatagtttatttt |
99 |
Q |
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| T |
39040285 |
gtaaaagatgatgtaatgaaaatatattgctggtttgagtttgtaatgtgtaccgaaagttatagtactagtattttttaatttgtatatagtttatttt |
39040384 |
T |
|
| Q |
100 |
tatcaatagacaannnnnnnaagaggtatcaatacaatagatgaccttgaatcgtagaaacactaaacaaatttttagtaaatccaattgacacattata |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39040385 |
tatcaatagacaatttttttaagaggtatcaatacaatagatgaccttgaatcgtagaaacactaaacaaatttttagtaaatccaattgacacattata |
39040484 |
T |
|
| Q |
200 |
gtaatagcaattaagtaaactttggcattaaggttctcttgaccatgttgggatgaataagcatcaaactttctcatcctaaaggtcaacagaaaagata |
299 |
Q |
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| T |
39040485 |
gtaatagcaattaagtaaactttggcattaaggttctcttgaccatgttgagatgaataagcatcaaactttctcatcctaaaagtcaacagaaaagata |
39040584 |
T |
|
| Q |
300 |
atatcattcctcaatggtcaaacc----nnnnnnnnncttgtttgtttcatatgtcagccttaaagcaaactgattaagatctaatttaattgtagggac |
395 |
Q |
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| T |
39040585 |
atatcattcctcaatggtcaaacctttttttttttttcttgtttgtttcatatgtcagccttaaagcaaactgattaagatctaatttaattgtagggac |
39040684 |
T |
|
| Q |
396 |
cgttatattcaagcagaaaacatgtctttcaaaatcgatttaagttatgaatgaaatttctaatgtttttgtgtttgaaatttgcagaggtttataactc |
495 |
Q |
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| T |
39040685 |
cgttatattcaagcagaaaacatgtctttcaaaatcgatttaagttgtgaatgaaatatctaatgtttttgtgtttgaaatttgcagaggtttataactc |
39040784 |
T |
|
| Q |
496 |
ttttcaacttaatcatgtttaagccttccttcaagactcaaacat |
540 |
Q |
| |
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|
| T |
39040785 |
-tttcaacttaatcatgtttaagccttccttcaagactcaaacat |
39040828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 353 - 536
Target Start/End: Complemental strand, 31277600 - 31277417
Alignment:
| Q |
353 |
gccttaaagcaaactgattaagatctaatttaattgtagggaccgttatattcaagcagaaaacatgtctttcaaaatcgatttaagttatgaatgaaat |
452 |
Q |
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||||| |||||||||||||||||| ||||||||| |||| | ||||| || |||||| | ||||||||||| ||||||||||||||| |||||||||| |
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| T |
31277600 |
gccttgaagcaaactgattaagatataatttaatggtagaggttgttatgttaaagcagtagacatgtctttc-aaatcgatttaagttgtgaatgaaat |
31277502 |
T |
|
| Q |
453 |
ttctaatg--tttttgtgtttgaaatttgcagaggtttataactcttttcaacttaatcatgtttaagccttccttcaagactcaa |
536 |
Q |
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|||||||| ||| |||||||||||||||||||||| |||| ||| | |||| |||||||||| |||||||||||||||||||||| |
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| T |
31277501 |
ttctaatggttttatgtgtttgaaatttgcagaggtctatagctc-tatcaatttaatcatgtctaagccttccttcaagactcaa |
31277417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 43415984 - 43416098
Alignment:
| Q |
208 |
aattaagtaaactttggcatta---aggttctcttgaccatgttgggatgaataagcatcaaactttctcatcctaaaggtcaacagaaaagataatatc |
304 |
Q |
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||||||||||| |||||||| | || ||||| |||| ||||| |||| ||||||||||||||||||||| ||||| |||| |||||| |||||| |
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| T |
43415984 |
aattaagtaaaatttggcataatgaagtttctcctgacagtgttgagatgtataagcatcaaactttctcattctaaa-gtcataagaaaatataatagt |
43416082 |
T |
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| Q |
305 |
attcctcaatggtcaa |
320 |
Q |
| |
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| T |
43416083 |
aatcctctatggtcaa |
43416098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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