View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8665_low_3 (Length: 486)
Name: NF8665_low_3
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 3361424 - 3361879
Alignment:
| Q |
18 |
ctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaaca |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361424 |
ctcaatacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaaca |
3361523 |
T |
|
| Q |
118 |
catgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| |
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| T |
3361524 |
catgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcg |
3361623 |
T |
|
| Q |
218 |
aattagtcagtcctatggttcggataccaaaatctcaactaacaaacagagaaatacgaagtaccaacatagagacacctaaaaagggccaaacaaaata |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361624 |
aattagtcagtcctatggttcggataccgaaatctcaactaacaaacaaaaaaataccaagtaccaacatagagacacctaaaaagggccaaacaaaata |
3361723 |
T |
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| Q |
318 |
gagggagagaaagtataagaataaataccatatccacagtgaaagtaatcataatggcactcaagactctcagagtagttaccatcataggaaactaaca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3361724 |
gagggagagaaagtataagaataaataccatatccacagtgaaagtaatcatagtggcactcaaga--ctcagagtagttaccatcataggaaactaaca |
3361821 |
T |
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| Q |
418 |
ccagcaaagtacatgcaaaaagatataaactcatttatcatataagtataacaccaaa |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361822 |
ccagcaaagtacatgcaaaaagatataaactcatttatcatataagtataacaccaaa |
3361879 |
T |
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