View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8665_low_4 (Length: 461)
Name: NF8665_low_4
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 132 - 444
Target Start/End: Complemental strand, 5823411 - 5823099
Alignment:
| Q |
132 |
tgatgtattttctttattacaaactagcgaaaagattgacacataatgtttgtttatctgattttctatcgcgcttaattgtttatagaaagtcatataa |
231 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5823411 |
tgatgtattttctttattataaactagtgaaaagaccgacacataatgtatgtttatccgattttctatcgcgcttaattgtttatagaaagtgatataa |
5823312 |
T |
|
| Q |
232 |
attttggcatatattatgataaaatattattgtcaaataagattaaaatagttttccttttgcagtaataaccttttcatccagagaatgataacctttt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5823311 |
attttggcatatattatgataaaatattattgtcaaataagattaaaatagttttccttttgcagtaataattttttcatccagagaatgataacctttt |
5823212 |
T |
|
| Q |
332 |
catccagagaattgtatttggcaaccacaagccaaagaactatcatctgtacattttcaacccaaatgggagcttactcaagttcaacctccattcattt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823211 |
gatccagagaattgtatttggcaaccacaagccaaagaactatcatctgtacattttcaacccaaatgggagcttactcaagttcaacctccattcattt |
5823112 |
T |
|
| Q |
432 |
tcccatcatctgt |
444 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5823111 |
tcccatcatctgt |
5823099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 5823794 - 5823685
Alignment:
| Q |
17 |
agaatgtaataaaaggttcttcatgaaagaattgtttacaactttcaacttcaaaaagaagacatgttagtggccccaaaagcagtgttctaaccatgac |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5823794 |
agaatgaaataaaaggttcttcatgaaagaattgtttacaactttcaacttcaaaaagaaaacatgttactggccccaaaagcagtgttctaaccatgac |
5823695 |
T |
|
| Q |
117 |
caaatatgtt |
126 |
Q |
| |
|
|||||||||| |
|
|
| T |
5823694 |
caaatatgtt |
5823685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 25536728 - 25536682
Alignment:
| Q |
233 |
ttttggcatatattatgataaaatattattgtcaaataagattaaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
25536728 |
ttttggcatatattatgataaaatatttttgacaaataagattaaaa |
25536682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 45064102 - 45064047
Alignment:
| Q |
231 |
aattttggcatatattatgataaaatattattgtcaaataagattaaaatagtttt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||| |
|
|
| T |
45064102 |
aattttggcatatattatgataaaatatttttgacaaatatgattaaaataatttt |
45064047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University