View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8665_low_5 (Length: 371)
Name: NF8665_low_5
Description: NF8665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8665_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 29 - 361
Target Start/End: Original strand, 38350966 - 38351298
Alignment:
| Q |
29 |
tgattaactgagtacatactaatattatatgacatatatttaattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgttc |
128 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||| || ||||| |
|
|
| T |
38350966 |
tgattaattgagtacatgctaatattatatgacatatatttaatagattatgcgggatgcatgcatatactttctcattgagagtggtttcacgttgttc |
38351065 |
T |
|
| Q |
129 |
gttgcatttctaatcaatgttgcaatgatttatgtgactggtactgtttgcaaagctgatgatacttctggagagaatactgatcgttgcaatgatatta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38351066 |
gttgcatttctaatcaatgttgcaatgatttatgtgactggtactgcttgcaaagctgatgatatttctggagagaatgctgatcgttgcaatgatatta |
38351165 |
T |
|
| Q |
229 |
cccttgactttgcttctttcattctcctagtttctaatttagttcaatttgcaactattatggtcaaagcatgatattaagtttaatcctagttaagtaa |
328 |
Q |
| |
|
||||| ||| |||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38351166 |
cccttaactctgcttctttccttctccaggttcctaatttagttcactttgcaactattatggtcaaagcatgatattaagtttaatcatagttaagtaa |
38351265 |
T |
|
| Q |
329 |
ttatgtacttctcacgtgtgtagttttgatgtc |
361 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
38351266 |
ttatgtacatctcacgtgtgtagttttgatgtc |
38351298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 4940385 - 4940741
Alignment:
| Q |
5 |
ctaaaggagtaattaagcgaatat-tgattaactgagtacatactaatattatatgacatatatttaattgattatgcaggatgcatgcagatgctttct |
103 |
Q |
| |
|
||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||| |
|
|
| T |
4940385 |
ctaaaggagtaattaagggaatatctggttaattgagtacatactaatattatatgacatatattcaattgattacgcaggatgcatgcaaatactttct |
4940484 |
T |
|
| Q |
104 |
cattgagagtggtttcgcgctgttcgttgcatttctaatcaatgttgcaatgatttatgtgactggtactgtttgcaaagctgatgatacttctggagag |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
4940485 |
aattgagagtggtttcgcg-------ttgcatttctaatcaatgttgcaatgatttttgtgactggtactgtttacaaagctgatgatatttctgaagag |
4940577 |
T |
|
| Q |
204 |
aatactgatcgttgcaatgatattacccttgactttgcttctttcattctcctagtttctaatttagttcaatttgcaactattatggtcaaagcatgat |
303 |
Q |
| |
|
||| |||||||||||||||||||||| ||| ||| |||||||||| |||||| ||| |||||||| |||| | | |||||||||||||||||||||||| |
|
|
| T |
4940578 |
aatgctgatcgttgcaatgatattactcttaactctgcttctttccttctccaggttcctaatttacttcactctccaactattatggtcaaagcatgat |
4940677 |
T |
|
| Q |
304 |
atta---agtttaatcctagttaagtaattatgtacttctcacgtgtgtagttttgatgtccat |
364 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4940678 |
attaattagtttaatcctagttaagtaattatgtacatctcacgtgtgtagttttgatgtccat |
4940741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 196 - 358
Target Start/End: Original strand, 21311662 - 21311824
Alignment:
| Q |
196 |
ctggagagaatactgatcgttgcaatgatattacccttgactttgcttctttcattctcctagtttctaatttagttcaatttgcaactattatggtcaa |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
21311662 |
ctggagagaatgctgatcgttgcaatgatattacccttaactctgcttctttccttctccaagttcctaatttagttcagtttgcaactattatggtcaa |
21311761 |
T |
|
| Q |
296 |
agcatgatattaagtttaatcctagttaagtaattatgtacttctcacgtgtgtagttttgat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21311762 |
agcatgatattaagtttaatcctagttaagtaattatgtacatctcacgtgtgtagttttgat |
21311824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 21311525 - 21311665
Alignment:
| Q |
29 |
tgattaactgagtacatactaatattatatgacatatatttaattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgttc |
128 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||| |
|
|
| T |
21311525 |
tgattaattgagtacatactaatattatatgacatatattgaattgattatgcaggacgcatgcagatactttctcattgagagtggtttcacgatgttc |
21311624 |
T |
|
| Q |
129 |
gttgcatttctaatcaatgttgcaatgatttatgtgactgg |
169 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
21311625 |
gttgcatttctgatcaatgttgcaatgatttctgtgactgg |
21311665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 29 - 361
Target Start/End: Complemental strand, 40126094 - 40125759
Alignment:
| Q |
29 |
tgattaactgagtacatactaatattatatgacatatattt--aattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgt |
126 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
40126094 |
tgattaattgagtacatcctaatattatatgacatatatttttaattgattatgcaggatgcatgcagatactttctcattgagagtggtttcgcgttgt |
40125995 |
T |
|
| Q |
127 |
tcgttgcatttctaatcaatgttgcaatgatttatgtgactggtactgtttgcaaagctgatgatacttctggagagaatactgatcgttgcaatgatat |
226 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
40125994 |
ttgttgcatttctaatcaatgttgcaatgatttctgtgactggcactgtttgcaaggctgatgatatttctggagagaatgttgatcgttgcaatgatat |
40125895 |
T |
|
| Q |
227 |
tacccttgactttgcttctttcattctcctagtttctaatttagttc-aatttgcaactattatggtcaaagcatgatattaagtttaatcctagttaag |
325 |
Q |
| |
|
||||||| ||| ||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40125894 |
tacccttaactccgcttctttccttctccaggttcctaatttagttcgcatttgcaactattatggtcaaagcatgatattaagtttaatcctaattaag |
40125795 |
T |
|
| Q |
326 |
taattatgtacttctcacgtgtgtagttttgatgtc |
361 |
Q |
| |
|
|| ||| ||| |||||| |||||| |||||||||| |
|
|
| T |
40125794 |
caagtatttacatctcacttgtgtaattttgatgtc |
40125759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University