View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8666_low_1 (Length: 433)
Name: NF8666_low_1
Description: NF8666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8666_low_1 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 73 - 397
Target Start/End: Original strand, 5206610 - 5206930
Alignment:
| Q |
73 |
agaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttacagttcacacctccttttcctctataaattcctacaac |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
5206610 |
agaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttaca----acaactccttttcctctataaattcctacaac |
5206705 |
T |
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| Q |
173 |
aactcaacagacacatattctccttcttttctttattttttaactttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5206706 |
aactcaacagacacatattctccttcttttctttattttttaactttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttc |
5206805 |
T |
|
| Q |
273 |
ttcatgacccttttcctctcctgcatgctcacccactcttcacgccctgaaccatcttttcaaaaggaatctatggtagcaacacagaatctggtttgtt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5206806 |
ttcatgacccttttcctctcctgcatgctcacccactcttcacgccctgaaccatcttttcaaaaggaatctatggtagcaacacagaaactggtttgtt |
5206905 |
T |
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| Q |
373 |
gatgctgttattcatttgttgttaa |
397 |
Q |
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||||||||||||||||||||||||| |
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| T |
5206906 |
gatgctgttattcatttgttgttaa |
5206930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 363
Target Start/End: Complemental strand, 38473025 - 38472877
Alignment:
| Q |
215 |
actttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttcttcatgacccttttcctctcctgcatgctcacccactcttca |
314 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| | ||||||||| |
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| T |
38473025 |
actttcttgttgccttctctaaaatattataaatatgaacaaaatttcagccttgttcttcatggcccttttactctcctgcatgccctttcactcttca |
38472926 |
T |
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| Q |
315 |
cgccctgaaccatcttttcaaaaggaatctatggtagcaacacagaatc |
363 |
Q |
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||| |||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
38472925 |
cgcactgaaccatcttttcaaaaggaatatttggtagcaacacataatc |
38472877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 38473201 - 38473111
Alignment:
| Q |
73 |
agaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttacagttcacacctccttttcctctataaattc |
165 |
Q |
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||||||||||||| ||||| |||||||||||||||| | || |||||||| | ||||||||| ||||| ||||||||||||||||||||||| |
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| T |
38473201 |
agaatttgattattggctg--caataaataaatctttcaaaatctttaaagatccacacttacggttcatacctccttttcctctataaattc |
38473111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 215 - 363
Target Start/End: Complemental strand, 47961 - 47813
Alignment:
| Q |
215 |
actttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttcttcatgacccttttcctctcctgcatgctcacccactcttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||| |
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| T |
47961 |
actttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttcttcatggcacttttactctcctgcatgctcttccactcttca |
47862 |
T |
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| Q |
315 |
cgccctgaaccatcttttcaaaaggaatctatggtagcaacacagaatc |
363 |
Q |
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| T |
47861 |
cgccctgacccatcttttcaaaaggaatttttggtagcaacacataatc |
47813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 48127 - 48037
Alignment:
| Q |
73 |
agaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttacagttcacacctccttttcctctataaattc |
165 |
Q |
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|||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||| ||| | ||||||||||||| ||||||||| |
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| T |
48127 |
agaatttgattatcggcta--caataaataaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttcctttataaattc |
48037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 215 - 363
Target Start/End: Original strand, 27439401 - 27439549
Alignment:
| Q |
215 |
actttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttcttcatgacccttttcctctcctgcatgctcacccactcttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||| |
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| T |
27439401 |
actttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttcttcatggcacttttactctcctgcatgctcttccactcttca |
27439500 |
T |
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| Q |
315 |
cgccctgaaccatcttttcaaaaggaatctatggtagcaacacagaatc |
363 |
Q |
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|||||||| ||||||||||||||||||| | ||||||||||||| |||| |
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| T |
27439501 |
cgccctgacccatcttttcaaaaggaatttttggtagcaacacataatc |
27439549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 27439235 - 27439325
Alignment:
| Q |
73 |
agaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttacagttcacacctccttttcctctataaattc |
165 |
Q |
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|||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||| ||| | ||||||||||||| ||||||||| |
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| T |
27439235 |
agaatttgattatcggcta--caataaataaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttcctttataaattc |
27439325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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