View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8666_low_3 (Length: 399)
Name: NF8666_low_3
Description: NF8666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8666_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 26556540 - 26556147
Alignment:
| Q |
1 |
ctttagaagagattaaacgtcgctgtgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26556540 |
ctttagaagagattaaacgtcactatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
26556441 |
T |
|
| Q |
101 |
gagctcaacaacgtgtgctggtgaaggaggagctgtgaaaaagggaactaaggcttcaagttcttatcaagaacggcgaaagggtgttccttggacggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26556440 |
gagctcaacaacgtgtgctggtgaaggaggagctgtgaaaaagggaactaaggcttcgagttcttatcaagaacggcgaaagggtgttccttggacggaa |
26556341 |
T |
|
| Q |
201 |
gatgaacataggttagtttatccttactttgtaactattataattaaatactggtgaataaatgaatatagtatacgtactataggtttaaatataattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
26556340 |
gatgaacataggttagtttatccttactttgtaactattataattaaatactggtgaataaatgaatatagcatacgtac--taggtttaaatatgattt |
26556243 |
T |
|
| Q |
301 |
tagtccttgcaactatagcgttttttggttttaatcttgtaag-gttttttgattggattaaatctctgcaaattcaaaagtattgcttttagttc |
395 |
Q |
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| T |
26556242 |
tagtccttgcaactataatgttttttggttttagtcttgtaagtttttttttattggattaaatctctgcaaattcaaaagtattgcttttagttc |
26556147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 26776146 - 26776234
Alignment:
| Q |
12 |
attaaacgtcgctgtgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
100 |
Q |
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| T |
26776146 |
attaaacatcactatgaggttttggtagatgatattcacaacattgaatctggttttgtgcctctaccagattatgattctttttcaaa |
26776234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 22159338 - 22159389
Alignment:
| Q |
285 |
ggtttaaatataattttagtccttgcaactatagcgttttttggttttaatc |
336 |
Q |
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| T |
22159338 |
ggtttaaatatgattttagtccatgcaattatagtgttttttggttttaatc |
22159389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 22218046 - 22218097
Alignment:
| Q |
285 |
ggtttaaatataattttagtccttgcaactatagcgttttttggttttaatc |
336 |
Q |
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| T |
22218046 |
ggtttaaatatgattttagtccatgcaattatagtgttttttggttttaatc |
22218097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 50597261 - 50597351
Alignment:
| Q |
283 |
taggtttaaatataattttagtccttgcaactatagcgttttttggttttaatcttgtaaggttttttgattggattaaatctctgcaaat |
373 |
Q |
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|
||||||||||||| |||||||||| ||||| | || |||||||| |||||| ||| ||| | ||||||| ||||||| | || |||||||| |
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| T |
50597261 |
taggtttaaatatgattttagtccctgcaattgtaacgttttttagttttagtctagtatgtttttttgtttggatttagtccctgcaaat |
50597351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 38306021 - 38305977
Alignment:
| Q |
289 |
taaatataattttagtccttgcaactatagcgttttttggtttta |
333 |
Q |
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||||||| |||||||||||||||| ||||| |||||||||||||| |
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| T |
38306021 |
taaatatgattttagtccttgcaattatagtgttttttggtttta |
38305977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 18953375 - 18953438
Alignment:
| Q |
287 |
tttaaatataattttagtccttgcaactatagcgttttttggttttaatcttgtaaggtttttt |
350 |
Q |
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||||||||| ||||||||| | ||||||||||||| |||||||||| | ||||||| |||||| |
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| T |
18953375 |
tttaaatatgattttagtctatccaactatagcgttatttggttttagttttgtaagttttttt |
18953438 |
T |
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