View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8667_high_5 (Length: 318)
Name: NF8667_high_5
Description: NF8667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8667_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 30956451 - 30956733
Alignment:
| Q |
15 |
aatactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcg |
114 |
Q |
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| T |
30956451 |
aatactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcg |
30956550 |
T |
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| Q |
115 |
gctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttaccatttattttattccatgattttctttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30956551 |
gctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttactatttattttattccatgattttctttg |
30956650 |
T |
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| Q |
215 |
aagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggagtttactg |
297 |
Q |
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| T |
30956651 |
aagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggagtttactg |
30956733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 294
Target Start/End: Original strand, 30946292 - 30946494
Alignment:
| Q |
92 |
aagcgccttgagggaattctgcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttaccattt |
191 |
Q |
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||||||| ||||| |||| |||||||||| || ||||| || |||||||| | ||||||| ||| | | |||||||||||||| |||||||| |||||| |
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| T |
30946292 |
aagcgccaagagggcattccgcggctgtttatattttgcggtatttgactttggtcatggcattcgcggcggttccaaactgccataattgttgccattt |
30946391 |
T |
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| Q |
192 |
attttattccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggagt |
291 |
Q |
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| T |
30946392 |
attttattgaaataatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtcaatcatgtcaaccagttaggagt |
30946491 |
T |
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| Q |
292 |
tta |
294 |
Q |
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||| |
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| T |
30946492 |
tta |
30946494 |
T |
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