View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8667_high_6 (Length: 258)

Name: NF8667_high_6
Description: NF8667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8667_high_6
NF8667_high_6
[»] chr2 (10 HSPs)
chr2 (18-242)||(42272411-42272630)
chr2 (18-242)||(42285445-42285664)
chr2 (181-242)||(42281234-42281295)
chr2 (179-242)||(42254870-42254934)
chr2 (51-158)||(42259913-42260011)
chr2 (179-242)||(42260390-42260453)
chr2 (51-158)||(42280463-42280561)
chr2 (55-151)||(42313582-42313669)
chr2 (18-50)||(42279248-42279280)
chr2 (18-50)||(7692101-7692133)
[»] scaffold0002 (3 HSPs)
scaffold0002 (51-158)||(488748-488846)
scaffold0002 (179-242)||(489225-489288)
scaffold0002 (18-50)||(487518-487550)
[»] chr8 (1 HSPs)
chr8 (18-50)||(12463850-12463882)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 42272411 - 42272630
Alignment:
Q  18 gatctgagaccagcaatgttggcatatatgaaaatttaaagttggcagagaaacaattctcaaagcttgaagtgacaaaattaaatcgcatgtaatttag 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      |||||||||| ||    
T  42272411 gatctgagaccagcaatgttggcatatatgaaaaattaaagttggcagagaaacaattctcaaagcttgaagtgacaaaatg-----gcatgtaattaag 42272505  T
Q  118 tagtacgggcttgtatattgatcttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggatgaagacaattagtt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42272506 tagtacgggcttgtatattgatcttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggatgaagacaattagtg 42272605  T
Q  218 tctcaatatcctatatcctatgaag 242  Q
    |||||||||||||||||||||||||    
T  42272606 tctcaatatcctatatcctatgaag 42272630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 42285445 - 42285664
Alignment:
Q  18 gatctgagaccagcaatgttggcatatatgaaaatttaaagttggcagagaaacaattctcaaagcttgaagtgacaaaattaaatcgcatgtaatttag 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     |||| |||||| ||    
T  42285445 gatctgagaccagcaatgttggcatatatgaaaatttaatgttggcagagaaacaattctcaaagcttgaagtgacaaaat-----cgcacgtaattaag 42285539  T
Q  118 tagtacgggcttgtatattgatcttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggatgaagacaattagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42285540 tagtacgggcttgtatattgatcttgataacaagtcgtgcaagaatttcccaatctatatatcttttatattttaatcaatgggatgaagacaattagtg 42285639  T
Q  218 tctcaatatcctatatcctatgaag 242  Q
    |||||||||||||||||||||||||    
T  42285640 tctcaatatcctatatcctatgaag 42285664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 42281234 - 42281295
Alignment:
Q  181 ttttatattttaatcaatgggatgaagacaattagtttctcaatatcctatatcctatgaag 242  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  42281234 ttttatattttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctaggaag 42281295  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 42254870 - 42254934
Alignment:
Q  179 tcttttatatttt-aatcaatgggatgaagacaattagtttctcaatatcctatatcctatgaag 242  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  42254870 tcttttatatttttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctaggaag 42254934  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 42259913 - 42260011
Alignment:
Q  51 atttaaagttggcagagaaacaattctcaaagcttgaagtgacaaaattaaatcgcatgtaatttagtagtacgggcttgtatattgatcttgataacaa 150  Q
    |||||||| |||||||||||||| ||||||||||||||||||||      |||| ||||||    ||||||| |||||||||||||||||||||||||||    
T  42259913 atttaaagctggcagagaaacaagtctcaaagcttgaagtgaca-----gaatcacatgta----agtagtaagggcttgtatattgatcttgataacaa 42260003  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 42260390 - 42260453
Alignment:
Q  179 tcttttatattttaatcaatgggatgaagacaattagtttctcaatatcctatatcctatgaag 242  Q
    ||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||| ||||    
T  42260390 tcttttatattttaatcaatggatcgaagacaattagtgtctcaatatcctatatcctaggaag 42260453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 42280463 - 42280561
Alignment:
Q  51 atttaaagttggcagagaaacaattctcaaagcttgaagtgacaaaattaaatcgcatgtaatttagtagtacgggcttgtatattgatcttgataacaa 150  Q
    |||||| | ||||||||||||||| ||||||||||||||||||| ||| |     |||||||    |||||| |||||||||||||||||||||||||||    
T  42280463 atttaatgctggcagagaaacaatcctcaaagcttgaagtgacagaatca-----catgtaa----gtagtaagggcttgtatattgatcttgataacaa 42280553  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 42313582 - 42313669
Alignment:
Q  55 aaagttggcagagaaacaattctcaaagcttgaagtgacaaaattaaatcgcatgtaatttagtagtacgggcttgtatattgatcttgataacaag 151  Q
    |||| ||||||||||||||||| |||||| |||||||||| ||| |     |||||||    |||||| ||||||||||||||||||||||||||||    
T  42313582 aaagctggcagagaaacaattcccaaagcatgaagtgacagaatca-----catgtaa----gtagtaagggcttgtatattgatcttgataacaag 42313669  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 42279248 - 42279280
Alignment:
Q  18 gatctgagaccagcaatgttggcatatatgaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  42279248 gatctgagaccagcaatgttggcatatatgaaa 42279280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 7692101 - 7692133
Alignment:
Q  18 gatctgagaccagcaatgttggcatatatgaaa 50  Q
    ||||||||||||||||||||| |||||||||||    
T  7692101 gatctgagaccagcaatgttgacatatatgaaa 7692133  T

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Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 488748 - 488846
Alignment:
Q  51 atttaaagttggcagagaaacaattctcaaagcttgaagtgacaaaattaaatcgcatgtaatttagtagtacgggcttgtatattgatcttgataacaa 150  Q
    |||||||| |||||||||||||| ||||||||||||||||||||      |||| ||||||    ||||||| |||||||||||||||||||||||||||    
T  488748 atttaaagctggcagagaaacaagtctcaaagcttgaagtgaca-----gaatcacatgta----agtagtaagggcttgtatattgatcttgataacaa 488838  T

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Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 489225 - 489288
Alignment:
Q  179 tcttttatattttaatcaatgggatgaagacaattagtttctcaatatcctatatcctatgaag 242  Q
    ||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||| ||||    
T  489225 tcttttatattttaatcaatggatcgaagacaattagtgtctcaatatcctatatcctaggaag 489288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 487518 - 487550
Alignment:
Q  18 gatctgagaccagcaatgttggcatatatgaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  487518 gatctgagaccagcaatgttggcatatatgaaa 487550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 12463850 - 12463882
Alignment:
Q  18 gatctgagaccagcaatgttggcatatatgaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  12463850 gatctgagaccagcaatgttggcatatatgaaa 12463882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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