View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8667_high_7 (Length: 217)
Name: NF8667_high_7
Description: NF8667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8667_high_7 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 14224 - 14093
Alignment:
| Q |
69 |
gtcaccaatttttagatgctacatcagaggagaggggaattgcaggaatgatatatgttcaagacaatggaggttgaagatcaatattaaagagaaagga |
168 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
14224 |
gtcaccaatttttagatgctacaacagaggagaggggaattgcaggaatgatatatgttcaagacaatggaggttgaagatgaatattaaagagaaagaa |
14125 |
T |
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| Q |
169 |
aaaatatagtgtggacaaaccaagctaaaatc |
200 |
Q |
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| T |
14124 |
aaaatatagtgtggacagaccaagctaaaatc |
14093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14284 - 14243
Alignment:
| Q |
1 |
gagagagaaaacacgaggcaggaaaggggtaattgatgactg |
42 |
Q |
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| T |
14284 |
gagagagaaaacatgaggcaggaaaggggtaattgatgactg |
14243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 7867382 - 7867251
Alignment:
| Q |
69 |
gtcaccaatttttagatgctacatcagaggagaggggaattgcaggaatgatatatgttcaagacaatggaggttgaagatcaatattaaagagaaagga |
168 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
7867382 |
gtcatcaatttttagatgctacaacagaggagaggggaattgcaggaatgatatatgttcaaaacaatggaggttgaagatcaatattaaagagaaagaa |
7867283 |
T |
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| Q |
169 |
aaaatatagtgtggacaaaccaagctaaaatc |
200 |
Q |
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| T |
7867282 |
aaaatatagtgtggacagaccaagctaaaatc |
7867251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7867447 - 7867406
Alignment:
| Q |
1 |
gagagagaaaacacgaggcaggaaaggggtaattgatgactg |
42 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
7867447 |
gagagagaaaacatgagccaggaaaggggtaattgatgactg |
7867406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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