View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8667_low_1 (Length: 1206)
Name: NF8667_low_1
Description: NF8667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8667_low_1 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 896; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 19 - 1186
Target Start/End: Complemental strand, 18807033 - 18805850
Alignment:
| Q |
19 |
atcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaaaa |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18807033 |
atcattccaaaccttgttgttctgttgcttccagatgctccaaagaatgcagcataacagcgctgcatcatcaccatttaacacctgcagtaactgaaaa |
18806934 |
T |
|
| Q |
119 |
aataacacttccccattcctgaccctaatttatcacactgtccacggttgtaaagaaatcacacatactccatatattgcaactaccatcacaatgnnnn |
218 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18806933 |
aataacacttgccctttcctgaccctaatttatcacactattcacagttgttaagaaatcacacatactccatatattgcaactaccatgacaatgaaag |
18806834 |
T |
|
| Q |
219 |
nnnnggtggaaactgtcttcctctgccatatttcataa------------ttcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagtgt |
306 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
18806833 |
aaaaggtggaaactatcttcctctgccatatttcataaagcacaagtcgattcacaattaacccctttgtctttaaggcgtaaatgtgttggtaaagtgt |
18806734 |
T |
|
| Q |
307 |
ttcgacagacaatatgaagttcctcaccttggaaggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatcaagtaat |
406 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18806733 |
ttcggcagacaatatgaagttccttgccttggaaggaattttaagcttcctaatcagatctcagggtccttgttccttaaaatgattgacatcaagtaat |
18806634 |
T |
|
| Q |
407 |
tcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggatacaaagacg |
506 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18806633 |
tcttgtatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggatacaaaggcg |
18806534 |
T |
|
| Q |
507 |
tattcaccacttgattcactgtatgttgatc-aaaatttaaagtaagaaaggaacattccaaactttagcttcatgaatgatacaatccgaaactttgag |
605 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18806533 |
tattcaccacttaattcactatatgttgatcaaaaattgaaagtaagaaaggaacattccaaactttagcttcaagaatgatacaatccgaaactttgag |
18806434 |
T |
|
| Q |
606 |
attatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatcacctatc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18806433 |
attatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatcacctatc |
18806334 |
T |
|
| Q |
706 |
atccacttgcttcccgccttaaggatgaacttggcattacaaataattctcctgac-----aaagcttggcttatgccccaagggagattnnnnnnnntt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| || || |
|
|
| T |
18806333 |
ttccacttgcttcccgccttaaggatgaacttgacattacaaataattctccagacaaattaaagcttggcttatgccccaagggagctt-aaaaaaatt |
18806235 |
T |
|
| Q |
801 |
actatgtggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaaa |
900 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18806234 |
actatgcggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcataacaagattaaaa |
18806135 |
T |
|
| Q |
901 |
gtccctaaactcttgaatcctatgcctccatcttttttgtgcatagataatttatcccaagcgtataattttgagatgagattcaaggattttcttattg |
1000 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
18806134 |
gtccctaagctcttgaatcccatgcctccattttttttgtgcatagataatttatcccaagcgtataattttgagatgagattcaaagatttccttattg |
18806035 |
T |
|
| Q |
1001 |
ttgttatcattttgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactactttatctctttattttcttttacttctaataa |
1100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18806034 |
ttgttatcattttgaatcacaacaatctaatctcgcattaggcaggacaa-taaaaccctgcaactactttatctctttattttcttttacttctaataa |
18805936 |
T |
|
| Q |
1101 |
attatgcaacttgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttg |
1186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18805935 |
attatgcaacttgctaagttgaacgataatccaagtgaagacgaaaacttactattttattacttgcgtacgatttggtgcacttg |
18805850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 950
Target Start/End: Complemental strand, 5634586 - 5633637
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || ||||||||||||||||| |||| |||||| |||||||||||||||||||||| || || | |
|
|
| T |
5634586 |
acatcattccagaccttgttgttccgttgcttccaaatactccaaagaatgcagcagaacagcgctgcctcatcaccatttaacacctgcaacaattgga |
5634487 |
T |
|
| Q |
117 |
aaaataacacttccccattcctgaccctaatttatcacactgtccacggttgtaaagaaatcacacatactccatatattgcaactaccatcacaatgnn |
216 |
Q |
| |
|
||| |||||||| | | ||||| || | |||||||||| | | ||| || |||||||||||||||| ||||| |||||||| |||||| ||| | |
|
|
| T |
5634486 |
aaa-taacacttgcactatcctggccttgatttatcacattattcacagtactaaagaaatcacacatgctccaaatattgcagctaccagggcaacgaa |
5634388 |
T |
|
| Q |
217 |
nnnnnnggtggaaactgtcttcctctgccatatttcataat------------tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagt |
304 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5634387 |
agaaaaggtgaaaactgtcttcctccaccatattgcataaagcacaagtcagatcacaattaacccctttgtctttaaggcgtaaacgtgttggtaaagt |
5634288 |
T |
|
| Q |
305 |
gtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatca |
400 |
Q |
| |
|
||| ||||| ||| ||||||||||| ||||||||| ||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5634287 |
gttgcgacaaacacgccatatgaagttcttcaccttgggaggaattttaagcttccagatcagatcccagcgtccttgtgccttaaaatgattgacatca |
5634188 |
T |
|
| Q |
401 |
agtaattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggataca |
500 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
5634187 |
agtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaagtctatcatcatgaactgagggataca |
5634088 |
T |
|
| Q |
501 |
aagacgtattcaccacttgattcactgtatgttgatcaaaattt-aaagtaagaaaggaacattccaaactttagcttcatgaatgatacaatccgaaac |
599 |
Q |
| |
|
||| |||||||| ||| ||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||| || | |||||||||||||| |
|
|
| T |
5634087 |
aaggcgtattcatcacctgattcactatatgttgatcaaaaatagaaagtaagaaaggaacattccaagctttagcttccggagtaatacaatccgaaac |
5633988 |
T |
|
| Q |
600 |
tttgagattatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatca |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5633987 |
tttgagattatcaaaaggtgttgaaccgtgattttgaagtgtaaggtatccattaccaacaagccagttattattccaaattggaattgaggacccatca |
5633888 |
T |
|
| Q |
700 |
cctatcatccacttgcttcccgccttaaggatgaacttggcattacaaataattctcctgacaaagcttggcttatgccccaagggagattnnnnnnnnt |
799 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| || || |||||||||||| |||||| |||||| ||||| ||||||||||||| || || | |
|
|
| T |
5633887 |
cctatcttccatctgcttcccgctctaaggataaatttagcattacaaatacttctccagacaaaacttggtttatgccccaaggaagcttcaaaaaaat |
5633788 |
T |
|
| Q |
800 |
tactatgtggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaa |
899 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5633787 |
tactatgcggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccacccctgcttaccaagcatagcaagattaaa |
5633688 |
T |
|
| Q |
900 |
agtccctaaactcttgaatcctatgcctccatcttttttgtgcatagataa |
950 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5633687 |
agtccctaaactcttgaatcccatgcctccatcttttttgtgcatagataa |
5633637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 912
Target Start/End: Original strand, 11568099 - 11569010
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||| ||||| |||||||||||||||||||||| || |||| |
|
|
| T |
11568099 |
acatcattccagaccttgttgttctgttgcttccaaatactccaaagaatgcagcagaacagcgctgtctcatcaccatttaacacctgcaacaattgaa |
11568198 |
T |
|
| Q |
117 |
aaaataacacttccccattcctgaccctaatttatcacactgtccacggttgtaaagaaatcacacatactccatatattgcaactaccatcacaatgnn |
216 |
Q |
| |
|
||| |||||||| | | || || || | |||||||||| | | ||| || |||||||||||||||| ||||| |||||||| |||||| ||| | |
|
|
| T |
11568199 |
aaa-taacacttgcactatcttggccttgatttatcacattattcacagtactaaagaaatcacacatgctccaaatattgcagctaccagggcaacgaa |
11568297 |
T |
|
| Q |
217 |
nnnnnnggtggaaactgtcttcctctgccatatttcataat------------tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagt |
304 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11568298 |
agaaaaggtgaaaactgtcttcctccaccatattgcataaagcacaagtcagatcacaattaacccctttgtctttaaggcgtaaacgtgttggtaaagt |
11568397 |
T |
|
| Q |
305 |
gtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatca |
400 |
Q |
| |
|
||| ||||| ||| ||||||||||| ||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
11568398 |
gttgcgacaaacacgccatatgaagttcttcaccttgggaggaattttaagcttccagatcagatcccaacgtccttgtgccttaaaatgattgacatca |
11568497 |
T |
|
| Q |
401 |
agtaattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggataca |
500 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
11568498 |
agtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaagtctatcatcatgaactgagggataca |
11568597 |
T |
|
| Q |
501 |
aagacgtattcaccacttgattcactgtatgttgatc-aaaatttaaagtaagaaaggaacattccaaactttagcttcatgaatgatacaatccgaaac |
599 |
Q |
| |
|
||| |||||||| ||| | ||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||| || | |||||||||||||| |
|
|
| T |
11568598 |
aaggcgtattcatcacctaattcactatatgttgatcaaaaatagaaagtaagaaaggaacattccaagctttagcttccagagtaatacaatccgaaac |
11568697 |
T |
|
| Q |
600 |
tttgagattatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatca |
699 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11568698 |
tttgagattatctaaaggtgttgaaccgtgaatttgaagtgtaaggtatccattaccaacaagccagttattataccaaattggaattgaggacccatca |
11568797 |
T |
|
| Q |
700 |
cctatcatccacttgcttcccgccttaaggatgaacttggcattacaaataattctcctgacaaagcttggcttatgccccaagggagattnnnnnnnnt |
799 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| || || ||| |||||||| |||||| ||||| ||||| ||||||||||| | || || | |
|
|
| T |
11568798 |
cctatcttccatctgcttcccgctctaaggataaatttagcaatacaaatacttctccaaacaaaacttggtttatgccccaatgaagcttcaaaaaaat |
11568897 |
T |
|
| Q |
800 |
tactatgtggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaa |
899 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11568898 |
tactatgcggaaaatatcttgctttgtacattctagctataagcgtttgagggttgatcataattctccacccctgcttaccaagcatagcaagattaaa |
11568997 |
T |
|
| Q |
900 |
agtccctaaactc |
912 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11568998 |
agtccctaaactc |
11569010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 7e-77
Query Start/End: Original strand, 258 - 489
Target Start/End: Complemental strand, 23834131 - 23833896
Alignment:
| Q |
258 |
tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagtgtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagct |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23834131 |
tcacaattaacccctttgtctttaaggcgtaaatgtgttggtaaagtgttgcgacaaacacgccatatgaagttcttcaccttggaaggaattttaagct |
23834032 |
T |
|
| Q |
354 |
tcctaaccagatctcaaggtccttgtgccttaaaatgattgacatcaagtaattcttgcatacacattctatatgcacttttaaaagaatactcaccatt |
453 |
Q |
| |
|
||| | |||||| ||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
23834031 |
tccagatcagatcccaatgtccttatgccttaaaatgattaacatcgagtaattcttgcatacacattttatatgcacttctaagagaatactcacaatt |
23833932 |
T |
|
| Q |
454 |
gttttccttcgtccaaacaagcctatcatcatgaac |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23833931 |
gttttccttcgtccaaacaagcctatcatcatgaac |
23833896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 23834385 - 23834295
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgca |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
23834385 |
acatcattccaaaccttgttgttctgttgcttccaaatactccaaagaatgcagcagaacaacgctgcctcataaccatgtaacacctgca |
23834295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1083 - 1186
Target Start/End: Complemental strand, 11467019 - 11466917
Alignment:
| Q |
1083 |
ttcttttacttctaataaattatgcaacttgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgca |
1182 |
Q |
| |
|
|||| |||||||||||||||| ||| | ||||||||||||| || |||||| ||| |||| | ||| ||||| ||||||| || | ||||||||| |||| |
|
|
| T |
11467019 |
ttctattacttctaataaattctgctaattgctaagttgaatgacaatccatgtggagacaataacctactactttattactt-cttacgatttgatgca |
11466921 |
T |
|
| Q |
1183 |
cttg |
1186 |
Q |
| |
|
|||| |
|
|
| T |
11466920 |
cttg |
11466917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1010 - 1065
Target Start/End: Complemental strand, 22334342 - 22334287
Alignment:
| Q |
1010 |
ttttgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaac |
1065 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
22334342 |
ttttgaatcaacaaaacctaatctcgcattgggcagaacaattaaaaccctgcaac |
22334287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1116 - 1182
Target Start/End: Complemental strand, 2978868 - 2978802
Alignment:
| Q |
1116 |
aagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgca |
1182 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
2978868 |
aagttgaacgacaatccctgtggagacgacaacttactattttattatttgagtaggatttggtgca |
2978802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1013 - 1132
Target Start/End: Original strand, 5637316 - 5637436
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactacttt-atctctttattttct-tttacttctaataaattatgcaac |
1110 |
Q |
| |
|
||||||| | ||||||||||||| | | |||| |||||||| ||| || |||| ||||| |||| ||||| |||| ||||||||||||||||| | | |
|
|
| T |
5637316 |
tgaatcagaccaacctaatctcgcactaggcaagacaattataacgctacaaccactttcatct-tttatattctatttacttctaataaatttctctaa |
5637414 |
T |
|
| Q |
1111 |
ttgctaagttgaacgataatcc |
1132 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
5637415 |
ttgctaagttgaacgacaatcc |
5637436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1117 - 1186
Target Start/End: Original strand, 10925052 - 10925120
Alignment:
| Q |
1117 |
agttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttg |
1186 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
10925052 |
agttgaacgaaaatccctatgaagacgataacttactactttattacttga-tacgatttggtgcacttg |
10925120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 950
Target Start/End: Original strand, 53708706 - 53709655
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaa |
116 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||| || ||||||||||||||||| |||| |||||| |||||||||||||||||||||| || || | |
|
|
| T |
53708706 |
acatcatttcagaccttgttgttccgttgcttccaaatactccaaagaatgcagcagaacagcgctgcctcatcaccatttaacacctgcaacaattgga |
53708805 |
T |
|
| Q |
117 |
aaaataacacttccccattcctgaccctaatttatcacactgtccacggttgtaaagaaatcacacatactccatatattgcaactaccatcacaatgnn |
216 |
Q |
| |
|
||| |||||||| | | ||||| || | |||||||||| | | | | || |||||||||||||||| ||||| |||||||| |||||| ||| | |
|
|
| T |
53708806 |
aaa-taacacttgcactatcctggccttgatttatcacattattcgcagtactaaagaaatcacacatgctccaaatattgcagctaccagggcaacgaa |
53708904 |
T |
|
| Q |
217 |
nnnnnnggtggaaactgtcttcctctgccatatttcataat------------tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagt |
304 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53708905 |
agaaaaggtgaaaactgtcttcctccaccatattacataaagcacaagtcagatcacaattaacccctttgtctttaaggcgtaaacgtgttggtaaagt |
53709004 |
T |
|
| Q |
305 |
gtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatca |
400 |
Q |
| |
|
||| ||||| ||| ||||||||||| ||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
53709005 |
gttgcgacaaacacgccatatgaagttcttcaccttgggaggaattttaagcttccagatcagatcccaacgtccttgtgccttaaaatgattgacatca |
53709104 |
T |
|
| Q |
401 |
agtaattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggataca |
500 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
53709105 |
agtaattcttgcatacacattttatatgcacttctaatagaatactcaccatgattttccttcgtccaaacaagtctatcatcatgaactaagggataca |
53709204 |
T |
|
| Q |
501 |
aagacgtattcaccacttgattcactgtatgttgatcaaaattt-aaagtaagaaaggaacattccaaactttagcttcatgaatgatacaatccgaaac |
599 |
Q |
| |
|
||| |||||||| ||| ||||||||| ||||||||| |||| | ||||||||||||||||||||||| |||||||||| || | |||||||||||||| |
|
|
| T |
53709205 |
aaggcgtattcatcacctgattcactatatgttgataaaaaatagaaagtaagaaaggaacattccaagctttagcttccggagtaatacaatccgaaac |
53709304 |
T |
|
| Q |
600 |
tttgagattatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatca |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53709305 |
tttgagattatcaaaaggtgttgaaccgtgattttgaagtgtaaggtatccattaccaacaagccagttattattccaaattggaattgaggacccatca |
53709404 |
T |
|
| Q |
700 |
cctatcatccacttgcttcccgccttaaggatgaacttggcattacaaataattctcctgacaaagcttggcttatgccccaagggagattnnnnnnnnt |
799 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| || || |||||||||||| |||||| ||||| ||||| ||||||||||| | || || | |
|
|
| T |
53709405 |
cctatcttccatctgcttcccgctctaaggataaatttagcattacaaatacttctccaaacaaaacttggtttatgccccaatgaagcttcaaaaaaat |
53709504 |
T |
|
| Q |
800 |
tactatgtggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaa |
899 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53709505 |
tactatgcggaaaatatcttgctttgtacattttagctataagcgtttgagggttggtcataattctccacccctacttaccaagcatagcaagattaaa |
53709604 |
T |
|
| Q |
900 |
agtccctaaactcttgaatcctatgcctccatcttttttgtgcatagataa |
950 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53709605 |
agtccctaaactcttgaatcccatgcctccatcttttttgtgcatagataa |
53709655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1013 - 1183
Target Start/End: Original strand, 21048275 - 21048445
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgc-aactactttatctctttattttcttttacttctaataaattatgcaact |
1111 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| ||| ||||||||| ||| ||| |||| ||||||||| |||||||| |||||||||||| || | | |
|
|
| T |
21048275 |
tgaatcacaa-aacctaatctcgcattatgcatgacgattaaaaccatgccaaccacttcatctctttaaattcttttatttctaataaattccgctaat |
21048373 |
T |
|
| Q |
1112 |
tgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcac |
1183 |
Q |
| |
|
| | ||||||||| | ||||| |||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21048374 |
taccaagttgaacaacaatccttgtgaagacgataacttacctttttattatttgcgtacgatttggtgcac |
21048445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1013 - 1128
Target Start/End: Complemental strand, 34332745 - 34332631
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactactttatctctttattttcttttacttctaataaattatgcaactt |
1112 |
Q |
| |
|
||||||| | ||||||||||||| ||| |||| |||||||||||| || |||| ||||||||| |||||||| | |||||||||||||||||| | || |
|
|
| T |
34332745 |
tgaatcaaaccaacctaatctcgcattaggcaagacaattaaaactcttcaaccactttatctttttatttttatgtacttctaataaattatgtta-tt |
34332647 |
T |
|
| Q |
1113 |
gctaagttgaacgata |
1128 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34332646 |
gctaagttgaacgata |
34332631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1015 - 1060
Target Start/End: Original strand, 18446470 - 18446514
Alignment:
| Q |
1015 |
aatcacaacaacctaatctcgtattgggcaggacaattaaaaccct |
1060 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18446470 |
aatcacaa-aacctaatctcgtattgggcaggacaattaaaaccct |
18446514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 45420760 - 45420667
Alignment:
| Q |
381 |
ccttaaaatgattgacatcaagtaattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaag |
474 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| ||||| | | ||||||||||| | ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
45420760 |
ccttgaaatgattaacatcaaataattcttggatacaaagacgatatgcactttgcacagaatactcaccattcgattccttagtccaaacaag |
45420667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1024 - 1064
Target Start/End: Original strand, 13066741 - 13066781
Alignment:
| Q |
1024 |
aacctaatctcgtattgggcaggacaattaaaaccctgcaa |
1064 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
13066741 |
aacctaatttcgcattgggcaggacaattaaaaccctgcaa |
13066781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1015 - 1072
Target Start/End: Original strand, 29438507 - 29438564
Alignment:
| Q |
1015 |
aatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactacttta |
1072 |
Q |
| |
|
|||||||| |||||||||||| ||| | || ||||||||||||||||| || |||||| |
|
|
| T |
29438507 |
aatcacaaaaacctaatctcgcattcgtcaagacaattaaaaccctgctaccacttta |
29438564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 959
Target Start/End: Original strand, 26381868 - 26382827
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || ||||||||||||||||| | ||||||||| |||||||||||||||||||||| || | | |
|
|
| T |
26381868 |
acatcattccagaccttgttgttccgttgcttccaaatactccaaagaatgcagcagagcaacgctgcctcatcaccatttaacacctgcaacaattcga |
26381967 |
T |
|
| Q |
117 |
aaaataacacttccccattcctgaccctaatttatcacactgtccacggttgtaaagaaatcacacatactccatatattgcaactaccatcacaatgnn |
216 |
Q |
| |
|
||| ||||| || | | ||||| || | |||||||||| | | ||| || |||||||||||||||| ||||| |||||||| |||||| ||| | |
|
|
| T |
26381968 |
aaa-taacaattgcactatcctg-ccttgatttatcacattattcacagtactaaagaaatcacacatgctccaaatattgcagctaccagggcaacgaa |
26382065 |
T |
|
| Q |
217 |
nnnnnnggtggaaactgtcttcctctgccatatttcataattcacaa------------ttaacccctttgtctttaaggcgtaaacgcattggtaaagt |
304 |
Q |
| |
|
|||| |||||||||| ||| ||| ||| ||||| ||||| |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
26382066 |
agaaaaggtgaaaactgtctttctccaccagattgcataaagcacaagtcggaacacaattaacccctttgtctttaagacataaacgtgttggtaaagt |
26382165 |
T |
|
| Q |
305 |
gtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatca |
400 |
Q |
| |
|
||| ||||| ||| |||||| |||| ||||||||| ||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
26382166 |
gttgcgacaaacacgccatatgatgttcttcaccttgggaggaattttaagcttccagatcagatcccagtgtccttgtgccttaaaatgattgacatca |
26382265 |
T |
|
| Q |
401 |
agtaattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggataca |
500 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
26382266 |
agtaattcttgcatacacattttatatgcacttctaacagaatacttaccattgttttccttcgtccaaacaagtctatcatcatgaactgagggataca |
26382365 |
T |
|
| Q |
501 |
--aagacgtattcaccacttgattcactgtatgttgatcaaaattt-aaagtaagaaaggaacattccaaactttagcttcatgaatgatacaatccgaa |
597 |
Q |
| |
|
||| |||||||| ||| ||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||| |||| |||||||| ||| |
|
|
| T |
26382366 |
caaaggcgtattcatcacctgattcactatatgttgatcaaaaatagaaagtaagaaaggaacattccaagctttagcttccggaataatacaatctgaa |
26382465 |
T |
|
| Q |
598 |
actttgagattatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccat |
697 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26382466 |
actttaagattatcaaaacgtgttgaaccgtgattttgaagtgtaaggtatccattaccaacaagccagttattattccaaattggaattgaggacccat |
26382565 |
T |
|
| Q |
698 |
cacctatcatccacttgcttcccgccttaaggatgaacttggcattacaaataattctcctgacaaagcttggcttatgccccaagggagattnnnnnnn |
797 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||| || || |||||||||||| |||||| |||||| ||||| ||||||||||||| || || |
|
|
| T |
26382566 |
cacctatcttccatctgcttcccgctctaaggataaatttagcattacaaatacttctccagacaaaacttggtttatgccccaaggaagcttcaaaaaa |
26382665 |
T |
|
| Q |
798 |
nttactatgtggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagatta |
897 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26382666 |
attactatgcggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccacccctgcttaccaagcatagcaagatta |
26382765 |
T |
|
| Q |
898 |
aaagtccctaaactcttgaatcctatgcctccatcttttttgtgcatagataatttatccca |
959 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
26382766 |
aaagtccctaaactcttgaatcccatgcctccatcttttttgtgcatagataacttgtccca |
26382827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1013 - 1071
Target Start/End: Complemental strand, 24926839 - 24926781
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactacttt |
1071 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24926839 |
tgaatcacaccaacctaatcttgtattgggcaggacaattaaaaccctgcaaccacttt |
24926781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1013 - 1187
Target Start/End: Original strand, 14140124 - 14140298
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactactttatctctttattttct-tttacttctaataaattatgcaact |
1111 |
Q |
| |
|
||||||| | |||||||||||| ||||||||| || | |||| |||||| | ||||||||||| | |||| ||||||||||||||||| ||| | | |
|
|
| T |
14140124 |
tgaatcaaaccaacctaatctcacgttgggcagggcagctgaaactttgcaaccattttatctcttt-tcttctatttacttctaataaattctgctaat |
14140222 |
T |
|
| Q |
1112 |
tgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttgc |
1187 |
Q |
| |
|
| ||||||| ||||| |||||| ||| ||| || ||||||||||| ||||| || ||||||||| |||| |||| |
|
|
| T |
14140223 |
ttctaagttcaacgacaatccatgtggagatgataacttactattgtattacttttctacgatttgatgcatttgc |
14140298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1010 - 1064
Target Start/End: Original strand, 8541754 - 8541808
Alignment:
| Q |
1010 |
ttttgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaa |
1064 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| | |||||||| ||||||| |
|
|
| T |
8541754 |
ttttcaatcacaacaacctaatctcgcattgggcagaataattaaaatcctgcaa |
8541808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1013 - 1071
Target Start/End: Complemental strand, 13582004 - 13581946
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgcaactacttt |
1071 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||| |||||| ||||| |
|
|
| T |
13582004 |
tgaatcacaataacctaatctcgcattgggtaggacaattgaaaccttgcaaccacttt |
13581946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1017 - 1056
Target Start/End: Complemental strand, 6887225 - 6887186
Alignment:
| Q |
1017 |
tcacaacaacctaatctcgtattgggcaggacaattaaaa |
1056 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
6887225 |
tcacaacaatctaatctcgcattgggcaggacaattaaaa |
6887186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1117 - 1186
Target Start/End: Original strand, 18790039 - 18790107
Alignment:
| Q |
1117 |
agttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttg |
1186 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
18790039 |
agttgaacgaaaatccctatgaagacgataacttactactttattacttga-tacgatttggtgcacttg |
18790107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 258 - 950
Target Start/End: Original strand, 19111141 - 19111834
Alignment:
| Q |
258 |
tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagtgtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagct |
353 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| || | |||| |||||||||||| | |
|
|
| T |
19111141 |
tcacaattaaaccctttgtctttaaggcgtaaacgtgttggtaaagtgttgcgacaaacacgccatatgaagttcttcgctttgggaggaattttaagtt |
19111240 |
T |
|
| Q |
354 |
tcctaaccagatctcaaggtccttgtgccttaaaatgattgacatcaagtaattcttgcatacacattctatatgcacttttaaaagaatactcaccatt |
453 |
Q |
| |
|
||| | |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
19111241 |
tccatatcagatcccagtggccttgtgccttaaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccatt |
19111340 |
T |
|
| Q |
454 |
gttttccttcgtccaaacaagcctatcatcatgaaccgagggatacaaagacgtattcaccacttgattcactgtatgttgatcaaaattt-aaagtaag |
552 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||| ||| ||||||||| |||||||||||||| | |||||||| |
|
|
| T |
19111341 |
attttccttcgtccaaacaagtctatcatcataaactgagggatacaaaggcgtattcatcacctgattcactatatgttgatcaaaaatagaaagtaag |
19111440 |
T |
|
| Q |
553 |
aaaggaacattccaaactttagcttcatgaatgatacaatccgaaactttgagattatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccat |
652 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19111441 |
aaaggaacattacaagctttagcttccggaataatacaatcagaaactttgagattatcaaaaggtgttgaaccgtgattttgaagtgtaaggtatccat |
19111540 |
T |
|
| Q |
653 |
tgccaacaatccagttattattccaaattggaattgaggacccatcacctatcatccacttgcttcccgccttaaggatgaacttggcattacaaataat |
752 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||| || || |||||||||||| | |
|
|
| T |
19111541 |
taccaacaagccagttattattccaaattggaattgaggacccatcacctatcttccatctgcttccagctctaaggataaatttagcattacaaatact |
19111640 |
T |
|
| Q |
753 |
tctcctgacaaagcttggcttatgccccaagggagattnnnnnnnnttactatgtggaaaatatcttactttgtacattctagctataagcgtcagagga |
852 |
Q |
| |
|
|| | ||||| ||||| ||||||||||||| | || |||||||| |||||||||||| ||||||||||| |||||| ||| || |||| |
|
|
| T |
19111641 |
tcac---acaaaacttggtttatgccccaaggttgcttcaaaaaaattactatgcggaaaatatcttgctttgtacattatagctaaaagagtttaagga |
19111737 |
T |
|
| Q |
853 |
ttggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaaactcttgaatcctatgcctccatcttttttgtgcatagataa |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19111738 |
ttggtcataattctccacccctgcttaccaagcatagcaagatt-aaagtccctaaactcttgaatcccatgcctccatcttttttgtgcatagataa |
19111834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 19110888 - 19110979
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgctt-ccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgca |
107 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||| || ||||||||||||||| | |||| ||||| |||||||||||||||||||||| |
|
|
| T |
19110888 |
acatcattccagaccttgttgtttcgttgctttccaaatactccaaagaatgcagtagaacagtgctgcctcatcaccatttaacacctgca |
19110979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1011 - 1185
Target Start/End: Complemental strand, 22558032 - 22557856
Alignment:
| Q |
1011 |
tttgaatcacaacaacctaatctcgtattgggcaggacaatt-aaaaccctgcaactactttatctc-tttattttcttttacttctaataaattatgca |
1108 |
Q |
| |
|
||||||||| | ||| ||||||||| |||| ||| ||||||| |||| | |||||| |||||||||| |||||||| ||||||||| |||||||| | |
|
|
| T |
22558032 |
tttgaatcagaccaatctaatctcgcattgtgcacgacaattaaaaaacttgcaaccactttatctcttttatttttttttacttcaaataaattcctct |
22557933 |
T |
|
| Q |
1109 |
acttgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcactt |
1185 |
Q |
| |
|
| | ||||||||||| | |||| |||||||| | ||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
22557932 |
aatcactaagttgaacaaaaatctttgtgaagactataacttactactttattacttttttacgatttggtgcactt |
22557856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 809 - 961
Target Start/End: Complemental strand, 32095867 - 32095715
Alignment:
| Q |
809 |
gaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaa |
908 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||| || ||||| ||||||||||||||||| || || || | |||||| || |||||||| || | |
|
|
| T |
32095867 |
gaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaag |
32095768 |
T |
|
| Q |
909 |
actcttgaatcctatgcctccatcttttttgtgcatagataatttatcccaag |
961 |
Q |
| |
|
||| ||||| | || |||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
32095767 |
acttttgaagctcatacctccatcgtttttatgcattgataatttatcccaag |
32095715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 925 - 961
Target Start/End: Complemental strand, 24176328 - 24176292
Alignment:
| Q |
925 |
cctccatcttttttgtgcatagataatttatcccaag |
961 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24176328 |
cctccatctttcttgtgcatagataatttatcccaag |
24176292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1022 - 1102
Target Start/End: Complemental strand, 32929301 - 32929222
Alignment:
| Q |
1022 |
acaacctaatctcgtattgggcaggacaattaaaaccctgcaactactttatctctttattttcttttacttctaataaat |
1102 |
Q |
| |
|
||||| |||||||| |||| | ||||||||||||| ||| |||| ||||||||||||| | || ||||| ||||||||||| |
|
|
| T |
32929301 |
acaacttaatctcgcattgagtaggacaattaaaaacctacaaccactttatctcttt-tattgttttatttctaataaat |
32929222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 383 - 900
Target Start/End: Original strand, 5211791 - 5212309
Alignment:
| Q |
383 |
ttaaaatgattgacatcaagtaattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcat |
482 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| | |||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
5211791 |
ttaaaatgattgacatcaagtaatccttgcatacacattttatatgcacttctaacaaaatactcatcattattttccttcgtccaaacaagtctatcat |
5211890 |
T |
|
| Q |
483 |
catgaaccgagggatacaaagacgtattcaccacttgattcactgtatgttgatcaaaattt-aaagtaagaaaggaacattccaaactttagcttcatg |
581 |
Q |
| |
|
||||||| || |||||||||| |||||||| ||| ||||| | | |||||||||||||| | ||||||||||||||||||||||| |||||||||| | |
|
|
| T |
5211891 |
catgaactgaaggatacaaaggcgtattcatcacctgatt-attatatgttgatcaaaaatagaaagtaagaaaggaacattccaagctttagcttccgg |
5211989 |
T |
|
| Q |
582 |
aatgatacaatccgaaactttgagattatcaaaaggtgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaatt |
681 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
5211990 |
aataatacaatccgaaactttgagattatcaaaaggtgttgaaccgtgattttgaagtgtaaggtatccattaccaacaagccatttattattccaaatt |
5212089 |
T |
|
| Q |
682 |
ggaattgaggacccatcacctatcatccacttgcttcccgccttaaggatgaacttggcattacaaataattctcctgacaaagcttggcttatgcccca |
781 |
Q |
| |
|
| |||||||||||||||||||||| ||||| |||||||||| ||||||| || || |||||||||||| |||||| |||| ||||| |||||||||| |
|
|
| T |
5212090 |
gaaattgaggacccatcacctatcttccacctgcttcccgctctaaggataaatttagcattacaaatacttctccaagcaaaacttggtttatgcccca |
5212189 |
T |
|
| Q |
782 |
agggagatt-nnnnnnnnttactatgtggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttac |
880 |
Q |
| |
|
||| || || |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5212190 |
aggtagcttcaaaaaaaattactatgcggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccacccctgcttac |
5212289 |
T |
|
| Q |
881 |
caagcatagcaagattaaaa |
900 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5212290 |
caagcatagcaagattaaaa |
5212309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 5212652 - 5212562
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgca |
107 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || ||||||||||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
5212652 |
acatcattccagaccttgttgtttcgttgcttccaaatactccaaagaatgcagcagaacagtgctgcctcatcaccatttaacacctgca |
5212562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 1023 - 1187
Target Start/End: Complemental strand, 33175662 - 33175498
Alignment:
| Q |
1023 |
caacctaatctcgtattgggcaggacaattaaaaccctgcaactactttatctctttattttcttttacttctaataaattatgcaacttgctaagttga |
1122 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||| | | || |||||||||||| || ||||||||||||||||| | | |||||||||||| |
|
|
| T |
33175662 |
caacataatctcgtattgagcgggacaattaaaaccttaccaccgctttatctcttttagtttatttacttctaataaattcctctaattgctaagttga |
33175563 |
T |
|
| Q |
1123 |
acgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttgc |
1187 |
Q |
| |
|
|||| |||| | ||| ||| || ||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
33175562 |
acgacaatctatgtggagaagataacttactattttattacttgtttatgatttggtgcacttgc |
33175498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 258 - 350
Target Start/End: Complemental strand, 5212400 - 5212304
Alignment:
| Q |
258 |
tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagtgtttcgacagaca----atatgaagttcctcaccttggaaggaattttaa |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||| || |||||| ||||||||||| |
|
|
| T |
5212400 |
tcacaattaacccctttgtctttaaggcgtaaacgtgttggtaaagtgtcgcgacaaacacgccatatgaagttcttcgccttgggaggaattttaa |
5212304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1111 - 1187
Target Start/End: Complemental strand, 23420565 - 23420490
Alignment:
| Q |
1111 |
ttgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttgc |
1187 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| ||||||||| ||||||| ||| ||||||||||| ||||||| |
|
|
| T |
23420565 |
ttgctaagttgaacgacaatccttgtggagacgataacttactactttattacttg-ttacgatttggtacacttgc |
23420490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1023 - 1141
Target Start/End: Complemental strand, 34931987 - 34931868
Alignment:
| Q |
1023 |
caacctaatctcgtattgggcaggacaattaaaaccctgcaactact-ttatctctttat-tttcttttacttctaataaattatgcaacttgctaagtt |
1120 |
Q |
| |
|
||||||||| ||| |||| ||| |||||||||||||||||| ||| | |||| ||||| ||| ||||||||||||||||| ||| | |||||||||| |
|
|
| T |
34931987 |
caacctaatatcgcattgagcaaaccaattaaaaccctgcaaccactctcatct-tttatattttatttacttctaataaattctgctaattgctaagtt |
34931889 |
T |
|
| Q |
1121 |
gaacgataatccaagtgaaga |
1141 |
Q |
| |
|
|||||| || ||| ||||||| |
|
|
| T |
34931888 |
gaacgacaacccatgtgaaga |
34931868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1013 - 1058
Target Start/End: Complemental strand, 15297667 - 15297623
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaacc |
1058 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
15297667 |
tgaatcacaa-aacctaatctcgcattgggcagtacaattaaaacc |
15297623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1023 - 1187
Target Start/End: Original strand, 31314623 - 31314787
Alignment:
| Q |
1023 |
caacctaatctcgtattgggcaggacaattaaaaccctgcaactactttatctctt-tattttcttttacttctaataaattatgcaacttgctaagttg |
1121 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||| | ||||||||||| | || |||||| ||| | |||||||||||| ||| | ||||||||||| |
|
|
| T |
31314623 |
caacctaatctcacattaggcatgacaattaaaacaccataactactttatattttatattttattt-atttctaataaattttgctaattgctaagttg |
31314721 |
T |
|
| Q |
1122 |
aacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttgc |
1187 |
Q |
| |
|
|| || ||| || ||| |||| ||| ||||| ||||| | || ||||||| |||||| |||||| |
|
|
| T |
31314722 |
aatgaaaattcatgtggagacagtaacgtactactttatcactttcgtacgaattggtgaacttgc |
31314787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 618 - 959
Target Start/End: Complemental strand, 33348896 - 33348555
Alignment:
| Q |
618 |
tgttgaaccgtgattttgaagggtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatcacctatcatccacttgctt |
717 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
33348896 |
tgttgaaccgtgattttgaagtgtaaggtatccattaccaacaagccagttattattccaaattggaattgaggacccatcacctatcttccatctgctt |
33348797 |
T |
|
| Q |
718 |
cccgccttaaggatgaacttggcattacaaataattctcctgacaaagcttggcttatgccccaagggagattnnnnnnnnttactatgtggaaaatatc |
817 |
Q |
| |
|
||||| ||||||| || || |||||||||||| |||||| ||||| ||||| ||||||||||| | || || |||||||| |||||||||| |
|
|
| T |
33348796 |
cccgctctaaggataaatttagcattacaaatacttctccaaacaaaacttggtttatgccccaatgaagcttcaaaaaaattactatgcggaaaatatc |
33348697 |
T |
|
| Q |
818 |
ttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaaactcttgaa |
917 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33348696 |
ttgctttgtacattctagctataagcgtttgagggttggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaaactcttgaa |
33348597 |
T |
|
| Q |
918 |
tcctatgcctccatcttttttgtgcatagataatttatccca |
959 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
33348596 |
tcccatgcctccatcttttttgtgcatagataacttgtccca |
33348555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 341 - 908
Target Start/End: Original strand, 10421896 - 10422464
Alignment:
| Q |
341 |
ggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatcaagtaattcttgcatacacattctatatgcacttttaaaag |
440 |
Q |
| |
|
|||||||||||||||| || || ||| || | |||||||||||||| |||| ||||||| |||||| ||||||||||| | ||||||||| || | |
|
|
| T |
10421896 |
ggaattttaagcttccaaatcaaatcccaggaaccttgtgccttaaagtgatcaacatcaaataattcctgcatacacatacgatatgcactacgaatgg |
10421995 |
T |
|
| Q |
441 |
aatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggatacaaagacgtattcaccacttgattcactgtatgttgatc-aa |
539 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| || ||| || || || ||||||| |||| | || || |
|
|
| T |
10421996 |
aatactcaccattgttttcctttgtccaaactagcctatcatcatgaatcgagggatacagaggcgtgttgacaacctgattcataatatgctcgtcaaa |
10422095 |
T |
|
| Q |
540 |
aatttaaagtaagaaaggaacattccaaactttagcttcatgaatgatacaatccgaaactttgagattatcaaaaggtgttgaaccgtgattttgaagg |
639 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| | || ||| ||| |||| ||||||||||||||||||| | |||| ||| ||||||| || |
|
|
| T |
10422096 |
aattgaaagtaagaaaggaacattccaagctttttcctctggaagaatataatctgaaactttgagattatcaataacagttggacctggattttgtaga |
10422195 |
T |
|
| Q |
640 |
gtaaggtatccattgccaacaatccagttattattccaaattggaattgaggacccatcacctatcatccacttgcttcccgccttaaggatgaacttgg |
739 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||| || ||||| ||||| ||||| || |||| ||||||||||||| |||||| | || | |
|
|
| T |
10422196 |
gtaaggtaaccattgccagcaatccagttattgttccatatcggaataagtgacccgtcaccaattttccatctgcttcccgcctttaggatggatttag |
10422295 |
T |
|
| Q |
740 |
cattacaaataattctcctgacaaagcttggcttatgccccaagggagattnnnnnnnnttactatgtggaaaatatcttactttgtacattctagctat |
839 |
Q |
| |
|
| || | ||| | |||| ||| | |||| ||| |||||||| | || || ||||||| || |||||||||| ||||| ||||||| || || |
|
|
| T |
10422296 |
cgttgtagatactcctccaaacataacttgacttgtgccccaaagtagtttcaaaaaaattactatttgaaaaatatcttgctttgaacattcttgcaat |
10422395 |
T |
|
| Q |
840 |
aagcgtcagaggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaa |
908 |
Q |
| |
|
|||||| || |||| |||| |||| ||||||| | |||||| | |||| ||||||||| |||||||| |
|
|
| T |
10422396 |
aagcgtttgacgattagtcaaaattttccacccttacttacctaacatataaagattaaacgtccctaa |
10422464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 26510617 - 26510723
Alignment:
| Q |
21 |
cattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaaaaaa |
120 |
Q |
| |
|
||||||| ||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||| ||||| || || ||||| |
|
|
| T |
26510617 |
cattccagaccttgttgtttcgttgcttccaaatactccaaagaatgcagcagaacaacgctgcctcatcaccatttaacatctgcaacaattg-aaaaa |
26510715 |
T |
|
| Q |
121 |
taacactt |
128 |
Q |
| |
|
|||||||| |
|
|
| T |
26510716 |
taacactt |
26510723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 863 - 961
Target Start/End: Original strand, 31810501 - 31810599
Alignment:
| Q |
863 |
ttctccacccctgcttaccaagcatagcaagattaaaagtccctaaactcttgaatcctatgcctccatcttttttgtgcatagataatttatcccaag |
961 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| || || | ||| || || | |||||||||| |||| |||||||| || | ||||||||||| |
|
|
| T |
31810501 |
ttctccacccttgtttcccaagcatagcaagattaaatgttcccagacttttaaaacttatgcctccaactttattgtgcattgaaagtttatcccaag |
31810599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1116 - 1185
Target Start/End: Original strand, 24438583 - 24438652
Alignment:
| Q |
1116 |
aagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcactt |
1185 |
Q |
| |
|
|||||||||| |||| | || || |||| ||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
24438583 |
aagttgaacggcaatctatgttaaaacgataacttactattttattacttgcgtacgatttgatgcactt |
24438652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 10421558 - 10421642
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaaca |
101 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||| || ||||||| ||| ||||| || | ||||||| ||| |||||||||| |
|
|
| T |
10421558 |
acatcattccaaatcttgttattctgttgcttccaaatactccaaataatacagcacaatagtgctgcattatcgccatttaaca |
10421642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1116 - 1186
Target Start/End: Original strand, 25461228 - 25461298
Alignment:
| Q |
1116 |
aagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttg |
1186 |
Q |
| |
|
||||||||||| |||||| || |||||| ||||||||| ||||||| ||| |||| ||||| |||||||| |
|
|
| T |
25461228 |
aagttgaacgacaatccatttggagacgataacttactactttattacttgtgtacaatttgatgcacttg |
25461298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1024 - 1065
Target Start/End: Complemental strand, 27917071 - 27917030
Alignment:
| Q |
1024 |
aacctaatctcgtattgggcaggacaattaaaaccctgcaac |
1065 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
27917071 |
aacctaatctcgcattgggcaatacaattaaaaccctgcaac |
27917030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 6e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 43640048 - 43639627
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || ||||||||||||||||| ||||||| ||| |||||||||||||||||||||| || || | |
|
|
| T |
43640048 |
acatcattccagaccttgttgttccgttgcttccaaatactccaaagaatgcagcagaacaacgttgcctcatcaccatttaacacctgcaacaattgga |
43639949 |
T |
|
| Q |
117 |
aaaataacacttccccattcctgaccctaatttatcacactgtccacggttgtaaagaaatcacacatactccatatattgcaactaccatcacaatgnn |
216 |
Q |
| |
|
||| |||||||| | | ||||| || | |||||||||| | | | | || |||||||||||||||| ||||| |||||||| |||||| ||| | |
|
|
| T |
43639948 |
aaa-taacacttgcactatcctggccttgatttatcacattattcgcagtactaaagaaatcacacatgctccaaatattgcagctaccagggcaacgaa |
43639850 |
T |
|
| Q |
217 |
nnnnnnggtggaaactgtcttcctctgccatatttcataat------------tcacaattaacccctttgtctttaaggcgtaaacgcattggtaaagt |
304 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43639849 |
agaaaaggtgaaaactgtcttcctccaccatattgcataaagcacaagtcagatcacaattaacccctttgtctttaaggcgtaaacgtgttggtaaagt |
43639750 |
T |
|
| Q |
305 |
gtttcgacagaca----atatgaagttcctcaccttggaaggaattttaagcttcctaaccagatctcaaggtccttgtgccttaaaatgattgacatca |
400 |
Q |
| |
|
||| ||||| ||| ||||||||||| ||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
43639749 |
gttgcgacaaacacgccatatgaagttcttcaccttgggaggaattttaagcttccagatcagatcccaacgtccttgtgccttaaaatgattgacatca |
43639650 |
T |
|
| Q |
401 |
agtaattcttgcatacacattct |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43639649 |
agtaattcttgcatacacattct |
43639627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 925 - 961
Target Start/End: Complemental strand, 13501938 - 13501902
Alignment:
| Q |
925 |
cctccatcttttttgtgcatagataatttatcccaag |
961 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13501938 |
cctccatctttcttgtgcatagataatttatcccaag |
13501902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 850 - 961
Target Start/End: Complemental strand, 8086541 - 8086430
Alignment:
| Q |
850 |
ggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaaactcttgaatcctatgcctccatcttttttgtgcatagata |
949 |
Q |
| |
|
||||| |||||||||||||| || ||||| || | ||||||| ||||||||| |||| ||| || || || || || | ||||||||||||||| || | |
|
|
| T |
8086541 |
ggattagtcataattctccagccttgcttccccaacatagcagtattaaaagttcctagacttttaaaacccataccgctatcttttttgtgcatggaaa |
8086442 |
T |
|
| Q |
950 |
atttatcccaag |
961 |
Q |
| |
|
||||||||||| |
|
|
| T |
8086441 |
gtttatcccaag |
8086430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 38574768 - 38574809
Alignment:
| Q |
19 |
atcattccaaaccttgttgttatgttgcttccagatgctcca |
60 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
38574768 |
atcattccaaactttgttgttatgttgtttccatatgctcca |
38574809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 403 - 500
Target Start/End: Complemental strand, 21739520 - 21739423
Alignment:
| Q |
403 |
taattcttgcatacacattctatatgcacttttaaaagaatactcaccattgttttccttcgtccaaacaagcctatcatcatgaaccgagggataca |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
21739520 |
taattcttgcatacacatactatatgcactacgaacagaatactcaccattgttttcctttgtctaaactagcctatcatcatgaactgagggataca |
21739423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1013 - 1187
Target Start/End: Original strand, 18179246 - 18179420
Alignment:
| Q |
1013 |
tgaatcacaacaacctaatctcgtattgggcaggacaattaaaaccctgc-aactactttatctctttattttcttttacttctaataaattatgcaact |
1111 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | |||||||||| ||||| ||| |||| |||||||| |||||||| |||||||||||| ||| | | |
|
|
| T |
18179246 |
tgaatcacaacaacttaatctcgcattggg-aaaacaattaaaatcctgcaaaccacttcatctcttttaattcttttatttctaataaattctgctatt |
18179344 |
T |
|
| Q |
1112 |
tgctaagttgaacgataatccaagtgaagacgaaaacttactattttattaattgcgtacgatttggtgcacttgc |
1187 |
Q |
| |
|
| | |||||||| |||||| || || | || | ||||||||| ||||||| ||| || |||||| ||||||||| |
|
|
| T |
18179345 |
taccaagttgaaagataatgcatatggatacaataacttactactttattacttgtttatgatttgatgcacttgc |
18179420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 21739891 - 21739789
Alignment:
| Q |
17 |
acatcattccaaaccttgttgttatgttgcttccagatgctccaaagaatgcagcataacaacgctgcatcatcaccatttaacacctgcagtaactgaa |
116 |
Q |
| |
|
||||||||||| | |||||| || |||||||||| || || |||| ||| ||||| |||| ||||||||||| |||||||||| ||||||| ||| | |
|
|
| T |
21739891 |
acatcattccatatcttgttattccgttgcttccaaatacttcaaataatacagcagaacagcgctgcatcattgccatttaacagatgcagtagctgga |
21739792 |
T |
|
| Q |
117 |
aaa |
119 |
Q |
| |
|
||| |
|
|
| T |
21739791 |
aaa |
21739789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 849 - 959
Target Start/End: Original strand, 53497 - 53607
Alignment:
| Q |
849 |
aggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtccctaaactcttgaatcctatgcctccatcttttttgtgcatagat |
948 |
Q |
| |
|
||||||||||||||||||||| || ||||| || ||||| |||||||| || || |||||| | || || || || |||| ||||||||| |||||||| |
|
|
| T |
53497 |
aggattggtcataattctccaaccttgctttccgagcattgcaagattgaaggttcctaaatttttaaagcccatacctcaatcttttttatgcatagac |
53596 |
T |
|
| Q |
949 |
aatttatccca |
959 |
Q |
| |
|
|||| |||||| |
|
|
| T |
53597 |
aattcatccca |
53607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1024 - 1064
Target Start/End: Original strand, 32742 - 32782
Alignment:
| Q |
1024 |
aacctaatctcgtattgggcaggacaattaaaaccctgcaa |
1064 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
32742 |
aacctaatctcgcattgggtaggacaattaaaaccctgcaa |
32782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 925 - 961
Target Start/End: Original strand, 204625 - 204661
Alignment:
| Q |
925 |
cctccatcttttttgtgcatagataatttatcccaag |
961 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
204625 |
cctccatctttcttgtgcatagataatttatcccaag |
204661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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