View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8667_low_3 (Length: 490)
Name: NF8667_low_3
Description: NF8667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8667_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 178 - 467
Target Start/End: Complemental strand, 34123457 - 34123173
Alignment:
| Q |
178 |
cttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggttta |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34123457 |
cttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggttta |
34123358 |
T |
|
| Q |
278 |
tcaaattatttataatctagtagacaattggctttctctctaaaatagtttacaaaatagtattattgatccaatagttttagctaccataaaattgttc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34123357 |
tcaaattatttataatctagtagacaattggctttctctctaaaatagtttacaaaatagtattattgatccaatagttttagctaccataaaattgttc |
34123258 |
T |
|
| Q |
378 |
aagactatataaaataccatggacacattccttacccaatttgaatcatcgattgacaatctacaagaattgtgctttcataaacatgca |
467 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
34123257 |
aagactatataaaataccatggacacattccttacccaatttgaatcatcgatcgacaatctac-----ttgtgctttcataaacatgca |
34123173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 179 - 456
Target Start/End: Complemental strand, 34210717 - 34210440
Alignment:
| Q |
179 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
278 |
Q |
| |
|
||||||||||||||| | ||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
34210717 |
ttcaataaaaggcttggtatgccccattacaatctttcataaaacatttagatgaagtcttaaattaaaatatcttggagcaaaaggaaccaatgtttat |
34210618 |
T |
|
| Q |
279 |
caaattatttataatctagtagacaattggctttctctctaaaatagtttacaaaatagt----attattgatccaatagttttagctaccataaaattg |
374 |
Q |
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| T |
34210617 |
c-aattatttatgatctaatagacaattagttttctctctaaaataatttacaaaatagtgctacatactgatccaatagttttacctaccataaaattg |
34210519 |
T |
|
| Q |
375 |
ttcaagactatataaaataccatggacacattccttacccaatttgaatcatcgattgacaatctacaagaattgtgctttc |
456 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
34210518 |
ttcaagactatataaaa-accatggacacattccttaccc-atttgaat-atcgaccgacaatctataagaattgtgctttc |
34210440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 34123619 - 34123523
Alignment:
| Q |
16 |
gacatcaaacttccctgaatttaatttataactgtttgattagaaaaattagtctttgatacaattaatgtaacacctaaacccaagttttagatac |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34123619 |
gacatcaaacttctctgaatttaatttataactgtttgattagaaaaattagtctttgatacaattaatgtaacacctaaacccaagttttagatac |
34123523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 179 - 450
Target Start/End: Original strand, 12018364 - 12018634
Alignment:
| Q |
179 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
278 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
12018364 |
ttcaataaaaggcttaggatgctacatttcaatctttcacaaaatatttatatgaagtctcaaattaaaatatcttggagcaagaggaaccaaggtttac |
12018463 |
T |
|
| Q |
279 |
caaattatttataatctagtagacaattggctttctctctaaaatagtttacaaaatagtattattgatccaatagttttagctaccataaaattgttca |
378 |
Q |
| |
|
|||||||| ||| | ||| | ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
12018464 |
caaattatctatgacctaat-gacaattggctttctctctaaaataatttgtaaaatagtactattgatccaatagttttacctaccataaaattattca |
12018562 |
T |
|
| Q |
379 |
agactatataaaataccatggacacattccttacccaatttgaatcatcgattgacaatctacaagaattgt |
450 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |||||| || |||||||||||| |||||| |
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|
| T |
12018563 |
agactatataatataccatgaacacattccttacccaatttaaatcattgaccgacaatctacaacaattgt |
12018634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 179 - 419
Target Start/End: Original strand, 12018702 - 12018941
Alignment:
| Q |
179 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| | |
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| T |
12018702 |
ttcaataaaaggcttaggatgccacatttcaatttttcacaaaatatttatatgaagttttaaattaaaatatcttggagcaaaaggaaccaagattttt |
12018801 |
T |
|
| Q |
279 |
caaattatttataatctagtagacaattggctttctctctaaaatagtttacaaaatagtattattgatccaatagttttagctaccataaaattgttca |
378 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
12018802 |
caaattatctacgatctaat-gacaattggctttctctctaatataatttgtaaaatagtactattgatccaatagttttacctaccataaaattgttca |
12018900 |
T |
|
| Q |
379 |
agactatataaaataccatggacacattccttacccaattt |
419 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
12018901 |
aaactatataatataccatggacacattccttacccaattt |
12018941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 12018222 - 12018295
Alignment:
| Q |
38 |
aatttataactgtttgattagaaaaattagtctttgatacaattaatgtaa-cacctaaacccaagttttagat |
110 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||||| |||||||||| | ||||||||||| |||||||| |
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|
| T |
12018222 |
aatttattaatgtttgattagataaattagtctttgataccattaatgtaaccccctaaacccaaattttagat |
12018295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 179 - 437
Target Start/End: Complemental strand, 14623266 - 14623008
Alignment:
| Q |
179 |
ttcaataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
278 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| |
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|
| T |
14623266 |
ttcaatgaaaggcttaggatgtcacatttcaacctttcacaaaacatttatatgaagaattaaattaaaatatcttgaagcaaaaggaaccaagatttat |
14623167 |
T |
|
| Q |
279 |
caaattatttataatctagtagacaattggctttctctctaaaatagtttacaaaatagtattattgatccaatagttttagctaccataaaattgttca |
378 |
Q |
| |
|
|||||||||||| |||| ||||| ||| ||||||||||||||||| ||| ||||||| | ||||| ||||||||||||| |||||||||||||||| | |
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|
| T |
14623166 |
caaattatttatgatctgatagactatttgctttctctctaaaataatttcgaaaataggaatattggtccaatagttttacctaccataaaattgttga |
14623067 |
T |
|
| Q |
379 |
agactatataaaataccatggacacattccttacccaatttgaatcatcgattgacaat |
437 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14623066 |
agactatataaaataacatgaacacattccttacccaatttgaatcattgactgacaat |
14623008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 14623412 - 14623337
Alignment:
| Q |
38 |
aatttataactgtttgattagaaaaattagtctttgatacaattaatgtaaca-cctaaacccaagttttagatac |
112 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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|
| T |
14623412 |
aatttataaatgtttgatttgataaattagtctttgataccattaatgtaacaccctaaacccaaattttagatac |
14623337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 326 - 467
Target Start/End: Complemental strand, 12598950 - 12598812
Alignment:
| Q |
326 |
tttacaaaatagtattattgatccaatagttttagctaccataaaattgttcaagactatataaaataccatggacacattccttacccaatttgaatca |
425 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| |||||| || ||||| ||||||||||||| |||||||||||| ||||| ||| |||||||| |
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|
| T |
12598950 |
tttacaaaatagtactattgatccaatagttttacctagcataaattttttcaaaactatataaaatatcatggacacatttcttactcaa-ttgaatca |
12598852 |
T |
|
| Q |
426 |
tcgattgacaatctacaagaattgtgctttcataaacatgca |
467 |
Q |
| |
|
|||| |||||||| |||| ||||||||| ||||| ||||| |
|
|
| T |
12598851 |
tcgaccgacaatct--aagagttgtgcttttataaatatgca |
12598812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 12599047 - 12598951
Alignment:
| Q |
182 |
aataaaaggcttaggatgccacatttcaatctttcacaaaacatttatatgaagtcttaaattaaaatatcttggagcaaaacaaaccaaggtttat |
278 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
12599047 |
aataaaaggcttaggatgtcacattttaatcttccacaaatcatttatatgatgtcctaaattaaaatatcttggagcaaaaggaactaaggtttat |
12598951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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