View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8667_low_5 (Length: 420)
Name: NF8667_low_5
Description: NF8667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8667_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 409
Target Start/End: Complemental strand, 37571828 - 37571425
Alignment:
| Q |
6 |
agataatacttatctcatggtcgaactccaaaatacaaagatttcaatttttaaaaattgaaggtttgaagggttaacataaaaataaaatcgtaattct |
105 |
Q |
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| T |
37571828 |
agattatacttatctcatggtcgaactccaagatacaaagatttcaatttttaaaaattgaaggtttgaagggttaacataaaa-taaaatcgtaatttt |
37571730 |
T |
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| Q |
106 |
ggtctccacattgtaaaatgattattttcccttctatatttgtgt--atcatgaaaattattctattaaatttcatattatacaagtttaattattttaa |
203 |
Q |
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| T |
37571729 |
gatctccatattgtaaaatgattattttcccttctatatttgtgtgtatcatgaagattattctattaaatttcatattatacaagtttaattattttaa |
37571630 |
T |
|
| Q |
204 |
attgttttgccttgaactcattttttagcaaatgaagatgatcctatgagtggaactttcgaaatttaattttaaacttaaatatagttttgatccttct |
303 |
Q |
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| T |
37571629 |
attgttttgccttgaactcattttttagcaaatcaagatgatcctatgagtagaactgtcgaaattta-ttttaaacttaaatgtagttttgatcctcct |
37571531 |
T |
|
| Q |
304 |
attttactttgagaagttatagccccctagttttaaaaccaactttttagtccctttattatatatttaatgaattttttagtcctcccgtctgctttgg |
403 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
37571530 |
attttactttgagaagttttagccccctagttttaaaaccaactttttagtccctctattatatatttaatggattttttagtcctcctgtctgttttgg |
37571431 |
T |
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| Q |
404 |
tgatgt |
409 |
Q |
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|||||| |
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| T |
37571430 |
tgatgt |
37571425 |
T |
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