View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8668_low_2 (Length: 589)
Name: NF8668_low_2
Description: NF8668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8668_low_2 |
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| [»] scaffold0153 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 11238567 - 11237995
Alignment:
| Q |
1 |
tgaaaatcattataaaataatcacaaataaaagaaattcagtgagagagaaagacaggaaacatattatcattgcaatggtggaggaataatgaataatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11238567 |
tgaaaatcattataaaataatcacaaataaaagaaattcagtgagggagaaagacaggaaacatattatcattgcaatggtggaggaataatgaataatc |
11238468 |
T |
|
| Q |
101 |
tagaatcacaattcattgtttttggatcacagttcattgtttttggcagaaatatgtcatgccaactgtagataaagaaacttcacattgcttcaagcaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11238467 |
tagaatcacaattcattgcttttggatcacagttcattgtttttggcagaaatatgtcatgccaactgtagataaagaaacttcacattgcttcaagcaa |
11238368 |
T |
|
| Q |
201 |
tcccagcaacaagcagttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattttaacacacgacaagtgacagccaaaggacatagaacc |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11238367 |
tcccagcaacaagcggttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattttaacacacgacaagtgacagccaaaggacatggaacc |
11238268 |
T |
|
| Q |
301 |
tatttccaatcttagaaaaccaaatcactaaccacataatgaagtgcacaattaaagaatcgatnnnnnnnnntctaatcatcgaataaaataaatctaa |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11238267 |
taattccaatcttagaaaaccaaatcactaaccacataatgaagtgcacaattaaagaatcgatcaaaaaaactctaatcatcgaataaaataaatctaa |
11238168 |
T |
|
| Q |
401 |
caccacaattcctcaggcaacatatttcatggtctaataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaatagaaattaa |
500 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11238167 |
caccacaattcctcaggcaacatatttcatcgtctaataatgaacaataatccatgaagtaatcagcaaacaaaaggtacataacacaaatagaaattaa |
11238068 |
T |
|
| Q |
501 |
catacaggttgcagttagggagttgaagaatcccggttcttcataaacctcatgcacaagtgacataatatag |
573 |
Q |
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| T |
11238067 |
catacaggttgcagttagggagttgaagaatcccggttcttcataaacctcatgcacaagtgacataacatag |
11237995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 215 - 359
Target Start/End: Original strand, 7167029 - 7167171
Alignment:
| Q |
215 |
agttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattttaacacacg-acaagtgacagccaaaggacatagaacctatttccaatctt |
313 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||||||||||||||||||| || ||||||||||||||||||||||| |||| || |||| || |
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| T |
7167029 |
agttttgcagcatacatcataaaaaatttgtagcagtcatcaaacattttaacatacacacaagtgacagccaaaggacata---cctaatttcaatttt |
7167125 |
T |
|
| Q |
314 |
agaaaaccaaatcactaaccacataatgaagtgcacaattaaagaa |
359 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
7167126 |
agaaaaccaaaccactaaccatataatgaagtgcacaattaaagaa |
7167171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 216 - 359
Target Start/End: Original strand, 7173735 - 7173879
Alignment:
| Q |
216 |
gttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattttaacacacg-acaagtgacagccaaaggacatagaacctatttccaatctta |
314 |
Q |
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||||||||||||||||||| ||||||||||| ||| ||||||||||||||| | || |||||||||||||||||| |||| | ||| |||||||| | |
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| T |
7173735 |
gttttgcagcatacatcatcaaatttgtgtagcagccatcaaacattttaagatacatacaagtgacagccaaaggccatattaactaattccaatcatg |
7173834 |
T |
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| Q |
315 |
gaaaaccaaatcactaaccacataatgaagtgcacaattaaagaa |
359 |
Q |
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|||||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
7173835 |
gaaaaccaaacaactaaccatataatgaagtgcacaattgaagaa |
7173879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 7168145 - 7168212
Alignment:
| Q |
200 |
atcccagcaacaagcagttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattttaaca |
268 |
Q |
| |
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|||||| ||||| || ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
7168145 |
atcccaacaacacgcggttttgcagcatacatcataaaa-ttgtgtagcagtcgtcaaacattttaaca |
7168212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 7160110 - 7160190
Alignment:
| Q |
13 |
taaaataatcacaaataaaagaaattcagtgagagagaaagacaggaaacatattatcattgcaatggtggaggaataatg |
93 |
Q |
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| T |
7160110 |
taaaataataacaaagcataaaaatttagtgagcgagaaagagaggaaacatattaccattgggatggtggaggaataatg |
7160190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 505
Target Start/End: Original strand, 7173914 - 7173985
Alignment:
| Q |
435 |
taataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaa-tagaaattaacatac |
505 |
Q |
| |
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|||||||||| |||||||||||| ||| ||||||||| |||| || ||||||||| || |||||||||||| |
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| T |
7173914 |
taataatgaaagataatccatgaagtaaccagcaaacataaggcacctaacacaaattaaaaattaacatac |
7173985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 488
Target Start/End: Complemental strand, 29434 - 29344
Alignment:
| Q |
398 |
taacaccacaattcctcaggcaacatatttcatggtctaataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacaca |
488 |
Q |
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| T |
29434 |
taacatcacaatttctcaggcaacatatttcatcgtctaataacgaacaataatccatgaagtaaccagcaaacaaaaggtacataacaca |
29344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 29544 - 29454
Alignment:
| Q |
172 |
ataaagaaacttcacattgcttcaagcaatcccagcaacaagcagttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattt |
263 |
Q |
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||||||||||| | || |||||||| || || || ||||| || ||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
29544 |
ataaagaaactccgcagtgcttcaaaca-tctcaacaacaggcggttttgcagcatacatcataaaatttgtgtagcagtcgtcaaacattt |
29454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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