View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8668_low_3 (Length: 530)
Name: NF8668_low_3
Description: NF8668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8668_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 23134642 - 23135087
Alignment:
| Q |
11 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134642 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
23134741 |
T |
|
| Q |
111 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23134742 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
23134841 |
T |
|
| Q |
211 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134842 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
23134941 |
T |
|
| Q |
311 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatggggcgtgactggttatttggaaggggtaggcc |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134942 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggcc |
23135041 |
T |
|
| Q |
411 |
aattttgtttctagttgttagatgattaagggcattgaacctgtta |
456 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23135042 |
agttttgtttctagttgttagatgattaagggcattgaacctgtta |
23135087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 11895238 - 11894793
Alignment:
| Q |
11 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11895238 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttagaatgggggtggcgagcatgaaact |
11895139 |
T |
|
| Q |
111 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
210 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11895138 |
tgaattcgggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
11895039 |
T |
|
| Q |
211 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895038 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
11894939 |
T |
|
| Q |
311 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatggggcgtgactggttatttggaaggggtaggcc |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11894938 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggcc |
11894839 |
T |
|
| Q |
411 |
aattttgtttctagttgttagatgattaagggcattgaacctgtta |
456 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11894838 |
agttttgtttctagttgttagatgattaagggcattgaacctgtta |
11894793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 20282939 - 20282494
Alignment:
| Q |
11 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282939 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
20282840 |
T |
|
| Q |
111 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282839 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
20282740 |
T |
|
| Q |
211 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282739 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
20282640 |
T |
|
| Q |
311 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatggggcgtgactggttatttggaaggggtaggcc |
410 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20282639 |
ccatggtgtcatgtctacgatgtttcgtgtctttgggcacttgaaggatgcatctctggacaataatggggcgtgactggttatttggaaggggtaggcc |
20282540 |
T |
|
| Q |
411 |
aattttgtttctagttgttagatgattaagggcattgaacctgtta |
456 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282539 |
agttttgtttctagttgttagatgattaagggcattgaacctgtta |
20282494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 127 - 381
Target Start/End: Original strand, 14655859 - 14656113
Alignment:
| Q |
127 |
tcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggttgtttttggcacgtgcg |
226 |
Q |
| |
|
||||||||| ||||||||| | ||||| |||||| |||| ||||||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||| |
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| T |
14655859 |
tcaggtgtttgattattgataacaatgggaacatttttttgagcttcattagtggtagtttgtttatttggtaattgttgagttgttttaggcacgtgcg |
14655958 |
T |
|
| Q |
227 |
gttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtct |
326 |
Q |
| |
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||||||| |||| |||| || || ||||||||||||||| |||||||||||| |||||||||||||| | || |||||||||| ||| |||||| || |
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| T |
14655959 |
gttcaggagtggccttgcggttgagtgggggcgacaacattaaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcct |
14656058 |
T |
|
| Q |
327 |
gcgacgtttcgtgtctttgggcacttgaaggatgcatctttggacagtaatgggg |
381 |
Q |
| |
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||||||||| |||||||| || |||||| || ||| | ||||| ||||| ||||| |
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|
| T |
14656059 |
gcgacgttttgtgtctttaggaacttgatgggtgcgtgtttggtcagtagtgggg |
14656113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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