View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8668_low_4 (Length: 373)
Name: NF8668_low_4
Description: NF8668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8668_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41620336 - 41620690
Alignment:
| Q |
1 |
ccttcaccagatggtagcactgacctagatgggaatttcggccgcactgttagttttgagagcaacggcagcagctgcaccactgataattcatgtgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41620336 |
ccttcaccagatggtagcactgacctagatgggaatttcggccgcactgttagttttgagagcaacggcagcagctgcaccactgataattcatgtgagt |
41620435 |
T |
|
| Q |
101 |
ctgattcggttaaccttgttggcgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41620436 |
ctgattcggttaaccttgttggcgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatcc |
41620535 |
T |
|
| Q |
201 |
agtggtcattgagcaacaagctgctaaccattttcagaatggaacttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcatta |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41620536 |
agtggtcaatgagcaacaagctgctaaccattttcagaatggaacttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcatta |
41620635 |
T |
|
| Q |
301 |
gtaccaagagaaaagagaagtcatgcgatggatgataacgatgatactagtaatg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41620636 |
gtaccaagagaaaagagaagtcatgcgatggatgataacgatgatactagtaatg |
41620690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 41623685 - 41624014
Alignment:
| Q |
1 |
ccttcaccagatggtagcactgacctagatgggaatttcggccgcactgttagttttgagagcaacggcagcagctgcaccactgataattcatgtgagt |
100 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| ||||||| | | || |||||||||||| || |||||||||| |||||||||||| |||| ||| | |
|
|
| T |
41623685 |
ccttcaccaaatgatagcactgacccagatggaaatttcgatcacgatgctagttttgagagaaatggcagcagctacaccactgataactcatatgaat |
41623784 |
T |
|
| Q |
101 |
ctgattcggttaaccttgttggcgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatcc |
200 |
Q |
| |
|
|| ||| ||| |||| ||| | |||||| |||||||||| | || ||||||||||||||||| |||| |||||||| ||| || || || ||||||| |
|
|
| T |
41623785 |
ctaattgggtcaaccatgtcgtcgaattcgactcttcttccatacaactacaaactcctttaatagaaaaaaactacgatgacttgacagaagctgatcc |
41623884 |
T |
|
| Q |
201 |
agtggtcattgagcaacaagctgctaaccattttcagaatggaacttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcatta |
300 |
Q |
| |
|
||| ||||||||| || || || ||| |||||| || |||||||||||||||||||| ||||||||||||| ||| |||| |||||| ||||| | |
|
|
| T |
41623885 |
agttgtcattgagacacgaggtgataaacatttttgcaacggaacttggagttggaatgacattcagccagtgacggtgaaagaagtttcaccttcaaca |
41623984 |
T |
|
| Q |
301 |
gtaccaagagaaaagagaagtcatgcgatggat |
333 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| |
|
|
| T |
41623985 |
gtacc---agaaaaaagaagtcataagatggat |
41624014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 41626646 - 41626919
Alignment:
| Q |
1 |
ccttcaccagatggtagcactgacctagatgggaatttcggccgcactgttagttttgagagcaacggcagcagctgcaccactgataattcatgtgagt |
100 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| |||||| || ||| |||||||||||| || ||||||||||||| | ||||||| |||| ||| | |
|
|
| T |
41626646 |
ccttcaccgaatgatagcactgacccagatggaaatttcaattgcgctgctagttttgagagaaatggcagcagctgcatcgctgataactcatatgaat |
41626745 |
T |
|
| Q |
101 |
ctgattcggttaaccttgttggcgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatcc |
200 |
Q |
| |
|
|| | | ||| || | ||| | |||||| || |||| | | || ||||| ||| ||||||| |||| |||||||||||| || || || ||||||| |
|
|
| T |
41626746 |
ctaactgggtcaatcatgtcgtcgaattcgaatcttttcccatacaactaaaaagtcctttaatagaaaaaaactactatgacttgacagaagctgatcc |
41626845 |
T |
|
| Q |
201 |
agtggtcattgagcaacaagctgctaaccattttcagaatggaacttggagttggaatgaaattcagccagtga |
274 |
Q |
| |
|
||| ||||| ||| ||||| ||||||||||||||| || |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
41626846 |
agttgtcatcgagacacaaggtgctaaccattttcacaacggaacttggagttggaatgacattcaaccagtga |
41626919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University