View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8668_low_5 (Length: 314)
Name: NF8668_low_5
Description: NF8668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8668_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 44144893 - 44145166
Alignment:
| Q |
22 |
ttcgaataggaggattattttattctttttgacatgaaaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctgga |
121 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44144893 |
ttcgaataggaggattattttaatttttttgacatgaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctgga |
44144992 |
T |
|
| Q |
122 |
ccattttaaaaccaaagtcctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaa |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144993 |
ccattttacaaccaaagtcctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaa |
44145092 |
T |
|
| Q |
222 |
gccgtgtgttaaagtttctgcgtccgagtcaatgatcaaattgtggaaatcttgcatctgaacccgttgcaaac |
295 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44145093 |
gccgtgtgttaaagtttctgcgtctgagtcaatgatcaaattgtggaaatcttgcatctaaacccgttgcaaac |
44145166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 40893331 - 40893439
Alignment:
| Q |
58 |
aaaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccatttta----aaaccaaagtcctagaattcatgt |
153 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||| ||||| ||||||| |||||||||| ||| ||||| | | | | |||||||||||||||||| |
|
|
| T |
40893331 |
aaaacaagactttcattagagccatat--agtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcatgt |
40893428 |
T |
|
| Q |
154 |
gctgcagtatt |
164 |
Q |
| |
|
||||||||||| |
|
|
| T |
40893429 |
gctgcagtatt |
40893439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University