View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8668_low_7 (Length: 287)
Name: NF8668_low_7
Description: NF8668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8668_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 13945287 - 13945027
Alignment:
| Q |
18 |
acagaggtggttgtggaatcgtcataaatttttctggtggtgataaatgtggcggaggtggaaacgtcgtaaactttcatgacggtggaaaagggagcgg |
117 |
Q |
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| T |
13945287 |
acagaggtggttgtggaatcgtcataaatttttctggtggtgataaatgtggcggaggtggaaacgtcgtaaactttcatgacggtggaaaagggagcgg |
13945188 |
T |
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| Q |
118 |
caatggaaaatagatgggggatgcaagtaaagcattagaaaatccttcacagtaaactagacacatatacatgtatgttgtatctcatgttgacacgata |
217 |
Q |
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| T |
13945187 |
caatggaaaatagatgggggatgcaagtaaagcattagaaaatccttcacggtaaactagacacatatacatgtatgttgtatctcatgttgacacgata |
13945088 |
T |
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| Q |
218 |
caaatgtcgtaagaaatataaaataaatattggtgtgacatgctaaacatgaaagtataat |
278 |
Q |
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| T |
13945087 |
caaatgtcgtaagaaatataaaataaatattggtgtgacatgctaaacatgaaagtataat |
13945027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 13939576 - 13939502
Alignment:
| Q |
171 |
aaactagacacatatacatgtatgttgtatctcatgttgacacgata-caaatgtcgtaagaaatataaaataaa |
244 |
Q |
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| T |
13939576 |
aaactagacgcatatacatgtatgatgtatcccatgctgatgcaatatcaaatgttgtaagaaatgtaaaataaa |
13939502 |
T |
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