View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8668_low_8 (Length: 266)
Name: NF8668_low_8
Description: NF8668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8668_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 9069911 - 9070166
Alignment:
| Q |
1 |
gtcaatgttttacttttttatattgctagtcgtaggcttgtgagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaag |
100 |
Q |
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| T |
9069911 |
gtcaatgttttacttttttatattgctagtcgtaggcttgtgagggtaagcaccaaatattgtgcttgaagttccagaaattactatagtcaagatcaag |
9070010 |
T |
|
| Q |
101 |
tagttaaacaatgtttttgatggtgtgttgaatcgatatcaacattgctactaattttttggttcttttctgctatgtgtatgctgttgattttctggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9070011 |
tagttaaacaatgtttttgatggtgtgttgaatcgatatcaacattgctactaatattttggttcttttctgctatgtgtatgctgttgattttctggtt |
9070110 |
T |
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| Q |
201 |
tttcta-----ttgattgtagtatcttcaattcatgtttgtgttgaataatattgt |
251 |
Q |
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| T |
9070111 |
tttctattactttgattgtagtatcttcaattcatgtttgtgttgaataatattgt |
9070166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 8575629 - 8575838
Alignment:
| Q |
55 |
aaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatcaaca-------ttg |
147 |
Q |
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| T |
8575629 |
aaatattgtgcttgaagttccagaaattactgtaggcaagatcaagtagttaaacaatgtttttgatcgtgtgttgaatcaatagttacaaggaaatttg |
8575728 |
T |
|
| Q |
148 |
ctactaattttttggttcttttctgctatgtgtatgctgttgattttctggttttt------ctattgattgtagtatcttcaattcatgtttgtgttga |
241 |
Q |
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| T |
8575729 |
ctactaattttttggttcttttctgctacgtgtatgctgctgattttctggtttttctgctacttttgattgtagtatcttcaattcatgtttgttctga |
8575828 |
T |
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| Q |
242 |
ataatattgt |
251 |
Q |
| |
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|||||||||| |
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| T |
8575829 |
ataatattgt |
8575838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 9063290 - 9063506
Alignment:
| Q |
42 |
gagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatca |
141 |
Q |
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|||| ||||||| |||||||||| ||||||||| |||||||||||| | ||| |||||||||||| |||||| ||||| || |||||| |||||||| || |
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| T |
9063290 |
gaggttaagcactaaatattgtgtttgaagttccagaaattactattgacaa-atcaagtagttagacaatgcttttggtgatgtgtttaatcgatagca |
9063388 |
T |
|
| Q |
142 |
aca------ttgctactaattttttggttcttttctgctatgtgtatgctgttgattttctggtttttct----attgattgtagtatcttcaattcatg |
231 |
Q |
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| T |
9063389 |
acaagaaatttgctactattatttt--tttcttcctgctatgtgtatgctactgattttttagtttttctgctacttgattgcagtgtcttcaattcatg |
9063486 |
T |
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| Q |
232 |
tttgtgttgaataatattgt |
251 |
Q |
| |
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|||||| |||||| |||||| |
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| T |
9063487 |
tttgtgctgaatactattgt |
9063506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 9314478 - 9314401
Alignment:
| Q |
42 |
gagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttg |
119 |
Q |
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| T |
9314478 |
gaggttaagcaccaaatattgtgcttgaagttccagaaattgctataggcaagatcacgtagttaaacagcgtttttg |
9314401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 9063196 - 9063283
Alignment:
| Q |
47 |
taagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatc-aagtagttaaacaatgtttttgatggtgtgttgaat |
133 |
Q |
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| T |
9063196 |
taagcactatatattgtgcttgaagttccagaaattactatagataaaatcaaagtagttatacaatgcttttggtgatgtgttgaat |
9063283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 9289955 - 9289902
Alignment:
| Q |
91 |
caagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatcaaca |
144 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||| |
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| T |
9289955 |
caagaccaagtagttaaacaatttttttgatggtgtgttgaatcaatagcaaca |
9289902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9063055 - 9063092
Alignment:
| Q |
1 |
gtcaatgttttacttttttatattgctagtcgtaggct |
38 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |
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| T |
9063055 |
gtcaatgttttacttttttatattgctggtggtaggct |
9063092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 45218611 - 45218413
Alignment:
| Q |
42 |
gagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatca |
141 |
Q |
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|||| ||||||| |||||||||||||||||||| ||||||||||| || || | |||||||||||||||||||||||| ||||||||||||| |||| || |
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| T |
45218611 |
gaggttaagcactaaatattgtgcttgaagttccagaaattactacaggcatgttcaagtagttaaacaatgtttttggtggtgtgttgaattgatagca |
45218512 |
T |
|
| Q |
142 |
aca-------ttgctactaattttttggttcttttctgctatgtgtatgctgttgattttctggtttttct----attgattgtagtatcttcaattcat |
230 |
Q |
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| T |
45218511 |
acaaggaagtttgctactgattttctggtt-ttttctgctatgtgtatgctactggttttctggtttttctgctacttgattgtagtgtcttcaattcat |
45218413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 45241048 - 45240939
Alignment:
| Q |
104 |
ttaaacaatgtttttgatggtgtgttgaatcgatat--caaca-------ttgctactaattttttggttcttttctgctatgtgtatgctgttgatttt |
194 |
Q |
| |
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||||||||| |||||| ||||||||||||| ||||| ||||| |||||||| ||||| ||| | ||||||||||| |||||||| ||||||| |
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| T |
45241048 |
ttaaacaatatttttggtggtgtgttgaattgatatagcaacaaggaagtttgctactgattttctgggt-ttttctgctatatgtatgctactgatttt |
45240950 |
T |
|
| Q |
195 |
ctggtttttct |
205 |
Q |
| |
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||||||||||| |
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|
| T |
45240949 |
ctggtttttct |
45240939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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