View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8669_high_9 (Length: 221)
Name: NF8669_high_9
Description: NF8669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8669_high_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 45725350 - 45725149
Alignment:
| Q |
20 |
tagaaagagaatctctctttgcaataaaggagataagagcagtcaaaatcatgaacttgatttggcttccatccacttggccatggtcacgcaaggtcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725350 |
tagaaagagaatctctctttgcaataaaggagataagagcagtcaaaatcatgaacttgatttggcttccatccacttggccatggtcacgcaaggtcat |
45725251 |
T |
|
| Q |
120 |
atcacaatctttctcaaaattccatttttggaacaaattttcttacagtgtaataatcatcagtgatcaaactgaggcaaaatattttctatgctttaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45725250 |
atcacaatctttctcaaaattccatttttggaacaaattttcttacagtgtaataatcatcagtgatcaaactgaggcaaaatattttctatgctttaat |
45725151 |
T |
|
| Q |
220 |
ta |
221 |
Q |
| |
|
|| |
|
|
| T |
45725150 |
ta |
45725149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 39038050 - 39038113
Alignment:
| Q |
105 |
gtcacgcaaggtcatatcacaatctttctcaaaattccatttttggaacaaattttcttacagt |
168 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||| |||| |
|
|
| T |
39038050 |
gtcacgcaaggtcatatcacaatctttttcaaaattctatttttgaaacaatttttcttgcagt |
39038113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 27585573 - 27585645
Alignment:
| Q |
20 |
tagaaagagaatctctctttgcaataaaggagataag-agcagtcaaaatcatgaac-ttgatttggcttcca |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | ||||||||||| |||| ||||||||| ||||| |
|
|
| T |
27585573 |
tagaaagagaatctctctttgcaataaaggagataggtcgaagtcaaaatcaggaactttgatttggtttcca |
27585645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 27585659 - 27585721
Alignment:
| Q |
137 |
aattccatttttggaacaaattttcttacagtgtaataatcatcagtgatcaaactgaggcaaa |
200 |
Q |
| |
|
|||||||||||| |||||| ||||||||| || ||||||| ||| |||||||||||||||||| |
|
|
| T |
27585659 |
aattccatttttagaacaatttttcttactctgcaataatcttca-tgatcaaactgaggcaaa |
27585721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University