View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8669_low_10 (Length: 231)
Name: NF8669_low_10
Description: NF8669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8669_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 4116616 - 4116815
Alignment:
| Q |
15 |
agaggagaaaacgaaaggcaaaaataaaactaatctaaatttcgtgtgactatgcttcatatcgtccacactccttatatgctgcctgatctgaataatt |
114 |
Q |
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| T |
4116616 |
agaggagaaaatgaaaggcaaaaatgaaactaatctaaatttcgtgtgactatgcttcatatcgtgtacactcctcatatgctgcctgatttgaataatt |
4116715 |
T |
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| Q |
115 |
ttggttccaacttatgacagacgcacgatatactcgtgatatgtgtctctcatctcttatggtacactttacaacattgaatctcaagtgtactaaatat |
214 |
Q |
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| T |
4116716 |
ttggttccaacttatcacagacgcacgatatactcgtgatatgtgcatcttatctcttatggtacactttacaacattgaatttcaagtgtactaaatat |
4116815 |
T |
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