View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8669_low_2 (Length: 411)
Name: NF8669_low_2
Description: NF8669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8669_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 3534232 - 3534620
Alignment:
| Q |
18 |
cttaagtagggtggggaaaaccaaacctcatgcatacagttttggtgatgaatcctacgattgtgtttggtaattagttgaagattgaagcaaccacgac |
117 |
Q |
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| T |
3534232 |
cttaagtagggtggggaaaaccaaacctcatgcatacagttttggtgatgaatcctacgattgtgtttggtaattagttgaagattgaagcaaccacgac |
3534331 |
T |
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| Q |
118 |
aaaatggagatatatacaggagtaagttgtgataatatctccaaaatccactaaagaacatatgtttatctcacattttggttaatttaatcattacaat |
217 |
Q |
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| T |
3534332 |
aaaatggagatatatacaggagtaagttgtgataatatcttcaaaatccactaaagaacatatgtttatctcacattttggttaatttaatcattacaat |
3534431 |
T |
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| Q |
218 |
gttaattaaggaagcagaagagggaggataaatcataataattcgggtctgtttttgtttagaagaaaatcattcaggtctattgtttttgcatagaata |
317 |
Q |
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| T |
3534432 |
gttaattaaggaagcagaagagggaggataaatcataataattcgggtctgtttttgtttagaagaaaatcattcaggtctattgtttttgcatagaata |
3534531 |
T |
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| Q |
318 |
taataaacctaataatgtatctttgaacataactcagttgacagaaataatgaattgttataggtagggttttggttcgaactccaaac |
406 |
Q |
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| T |
3534532 |
taataaacctaataatgtatccttgaacataactcagtagacaaaaataatgaattgttatatgtagggttttggttcgaactccaaac |
3534620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 3526970 - 3527049
Alignment:
| Q |
27 |
ggtggggaaaaccaaacctcatgcatacagttttggtgatgaatcctacgattgtgtttggtaattagttgaagattgaa |
106 |
Q |
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| T |
3526970 |
ggtggggaaaaccaagcctcatgcatgaggttttgttgatgaatcccacgattgtgcttggtaattagttgaagattgaa |
3527049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 52363015 - 52363060
Alignment:
| Q |
341 |
tgaacataactcagttgacagaaataatgaattgttataggtaggg |
386 |
Q |
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| T |
52363015 |
tgaacatagttcagttgacagaaataatgcattgttatatgtaggg |
52363060 |
T |
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