View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8669_low_3 (Length: 346)
Name: NF8669_low_3
Description: NF8669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8669_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 38293352 - 38293688
Alignment:
| Q |
16 |
catatacaatgccaaatgccaatgaaagaagaattaatttctaatctttttacttatttttaccaatgactat-----------------gtatcaactc |
98 |
Q |
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| T |
38293352 |
catatacaatgccaaatgccaatgaaagaagaattaatttctattctttttacttatttttaccaatgactattttcttgataaatcaaggtatcgactc |
38293451 |
T |
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| Q |
99 |
gagataacaaagatctatttaaggggttgatatatcaattatgtaacaccaattgaatctataataaagaatatgatatcttttgaaaatcttgtctaat |
198 |
Q |
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| T |
38293452 |
gagataacaaagatctatttaaggggttgatatatcaattatgtaacaccaattgaatttataataaagaatatgatatcttttgaaaatcttgtctgat |
38293551 |
T |
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| Q |
199 |
aaattaaaagtcgagttttgtaaaataaattttgatttctcttctaaaaattaactcaaggaatgaaagcgctcaaacatacatacacatgttacccaac |
298 |
Q |
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| T |
38293552 |
aaattaaaaggtgagttttgtaaaataaattttgatttctcttctaaaagttacctcaaggaatgaaagcgttcaaacatacacacatat-ttatccaac |
38293650 |
T |
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| Q |
299 |
cgtcaaatgtgagattctaatacaacttcatagaataat |
337 |
Q |
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| T |
38293651 |
cgtc-aatgtaagattctaatacaacttcataaaataat |
38293688 |
T |
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