View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8669_low_5 (Length: 275)
Name: NF8669_low_5
Description: NF8669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8669_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 13771927 - 13772173
Alignment:
| Q |
13 |
gacatcaaatgttggagacatttccaatcttttcttcgacatttttcagcgacttcaacttttcaaaatttccctatttggcactctaatgtggagtata |
112 |
Q |
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| T |
13771927 |
gacatcaaatgttggagacattttcaatcttttcttcgacatttttcagcgacttcaactttccaaaattcccctatttggcactctaatgtggagtata |
13772026 |
T |
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| Q |
113 |
tggaagaaccagaataataagatttgcaatgatgtcttcgaaaattgtcaagcaatttgtcatagagccacaacgttgttagctagctgggagaatgctc |
212 |
Q |
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| T |
13772027 |
tgaaagaaccagaataataagatttgcaatgatgtcttcgaaaattgtcaagcaatttgtcatagagccacaacgttgttagctagctgggagaatgctc |
13772126 |
T |
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| Q |
213 |
aaggttggaaagcatcggcaccaattcctcaatatggattttgagat |
259 |
Q |
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| T |
13772127 |
aaggttggaaaacatcggcaccaattcctcaatatggattttgagat |
13772173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 6770562 - 6770715
Alignment:
| Q |
13 |
gacatcaaatgttggagacatttccaatcttttcttcgacatttttcagcgacttcaacttttcaaaatttccctatttggcactcta----atgtggag |
108 |
Q |
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| T |
6770562 |
gacattaaatgttggaaacatttccaatgttttcttcgacatttttcagcgaatccagatttccaaaattcctctttttggcactctaatgcatgtggag |
6770661 |
T |
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| Q |
109 |
tatatggaagaaccagaataataagatttgcaatgatgtcttcgaaaattgtca |
162 |
Q |
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| T |
6770662 |
tatatggaagaaccgaaataataaggtttggaatgatgtttctgaaaattgtca |
6770715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 6770715 - 6770771
Alignment:
| Q |
176 |
agagccacaacgttgttagctagctgggagaatgctcaaggttggaaagcatcggca |
232 |
Q |
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| T |
6770715 |
agagccacaacactgttagctagttgggagaatgctcaagatttgaaaacaacggca |
6770771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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