View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8669_low_7 (Length: 246)
Name: NF8669_low_7
Description: NF8669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8669_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38990959 - 38991191
Alignment:
| Q |
1 |
acaattccaccatacacttgaccatgactaccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacat |
100 |
Q |
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| T |
38990959 |
acaattccaccatacacttgaccatgactaccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacat |
38991058 |
T |
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| Q |
101 |
tgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcaga |
200 |
Q |
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| T |
38991059 |
tgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatgagataacgagctgtgaatggtgatgtcaga |
38991158 |
T |
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| Q |
201 |
gacaataccagaacctctcagcactgtgatgtc |
233 |
Q |
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| T |
38991159 |
gacaataccaaaacctctcagcactgtgatgtc |
38991191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 38954788 - 38954597
Alignment:
| Q |
29 |
taccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagaga |
128 |
Q |
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| T |
38954788 |
taccagataggaaaatgctaaaagaagaatggttagggttggtgatgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagaga |
38954689 |
T |
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| Q |
129 |
cgtcatttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctca |
220 |
Q |
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| T |
38954688 |
catcattttgatgggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctctca |
38954597 |
T |
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