View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8670_high_3 (Length: 431)
Name: NF8670_high_3
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 37051782 - 37051376
Alignment:
| Q |
19 |
aggtatccatccaatcttgctaatgctagcctttatctatcaattacttgttaaagtttttatgagatgagttctgacatacttacaggtcaatattgat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37051782 |
aggtatccatccaatcttgctaatggtagcctttatctatcaattacttgttaaagtttttatgagatgagttctgacatacttacaggtcaatattgat |
37051683 |
T |
|
| Q |
119 |
gattccaatatgaggacttactggctgtgatcttaagacattggtgtgtgactgagccatggttttttcgtggtggaacaaatttgcggctctggttcaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37051682 |
gattccaatatgaggacttactggctgtgatcttacgacattggtgtgtgactgagccatggttttttcgtggtggaacaaatttgcggctctggttcaa |
37051583 |
T |
|
| Q |
219 |
ctaactctagacttttggagatggtttatggtttatagacaaactatttctggaaacactgtgaattatatgaccatagcgacttaaaaatcttcataca |
318 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37051582 |
ctaactctagacttttggagatgttttatggtttatagacaaactatttctggaaacactgtgaattatatgaccatagcgacttaaaaatcttcataca |
37051483 |
T |
|
| Q |
319 |
tgatagtttttgtacatcccatgtaaccggatttaatttttg--cagtgtaaatagttaagtccttttatcccttctcttatggccattgagtttgtttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37051482 |
tgatagtttttgtacatcccatgtaaccggatttaatttttgtatagtgtaaatagttaagtccttttatcccttctcttatggccattgagtttgtttt |
37051383 |
T |
|
| Q |
417 |
ctctgct |
423 |
Q |
| |
|
|| |||| |
|
|
| T |
37051382 |
ctttgct |
37051376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University